AlexGa / PhylostratigraphyLinks
Pipeline for Phylostratigraphy
☆13Updated 3 years ago
Alternatives and similar repositories for Phylostratigraphy
Users that are interested in Phylostratigraphy are comparing it to the libraries listed below
Sorting:
- Evolutionary Transcriptomics with R☆48Updated last month
- Transposable element polymorphism identification☆34Updated 5 years ago
- A set of workflows written in Nextflow for Genome Annotation.☆46Updated last year
- De novo annotation of young retrotransposons☆48Updated 3 years ago
- Snakemake workflow for Illumina RNA-sequencing experiments - extract population genomic signals from RNA-Seq data☆18Updated 8 months ago
- Splice junction analysis and filtering from BAM files☆42Updated 3 years ago
- Pipeline for structural variation detection in cohorts☆52Updated 4 years ago
- R API for browsing, analyzing, and manipulating reference-aligned genome graphs in a GenomicRanges framework☆41Updated 3 weeks ago
- ☆45Updated 8 years ago
- Personal diploid genome creation and coordinate conversion☆30Updated 9 months ago
- TEMP is a software package for detecting transposable elements (TEs) insertions and excisions from pooled high-throughput sequencing dat…☆22Updated 8 years ago
- Identify and annotate TE-mediated insertions in long-read sequence data☆46Updated 5 months ago
- CNEFinder: Finding Conserved Non-coding Elements in Genomes☆25Updated 4 years ago
- ☆51Updated 6 years ago
- Split-read pipeline for the identification of non-reference TE insertions with TSDs☆25Updated 5 years ago
- Seeking information like heteroplasmy, structure variants, etc. on Mitochondrial genome from next generation sequencing☆41Updated 7 years ago
- Genome Annotation Without Nightmares☆46Updated 11 months ago
- Haplotype and population structure inference using neural networks.☆27Updated last year
- processing 10x genomics reads☆26Updated 6 years ago
- Long Reads Annotation pipeline☆72Updated 3 years ago
- GFF3sort: A Perl Script to sort gff3 files and produce suitable results for tabix tools☆51Updated 5 years ago
- Error correction of ONT transcript reads☆58Updated 2 years ago
- An R package for estimating poly(A)-tail lengths in Oxford Nanopore RNA and DNA reads.☆55Updated last year
- A repo contains historical and updated MTEC libraries.☆18Updated 5 years ago
- Converting and demultiplexing of PacBio BAM files into gzipped fasta and fastq files.☆39Updated 2 years ago
- Pipeline for structural variant image curation and analysis.☆49Updated 4 years ago
- Long-read splice alignment with high accuracy☆64Updated last year
- ☆29Updated 3 years ago
- toolkit to process gtf files☆17Updated 4 years ago
- Flexible Genotyping of Polyploids using Next Generation Sequencing Data☆30Updated 3 months ago