AlexGa / PhylostratigraphyLinks
Pipeline for Phylostratigraphy
☆13Updated 2 years ago
Alternatives and similar repositories for Phylostratigraphy
Users that are interested in Phylostratigraphy are comparing it to the libraries listed below
Sorting:
- Evolutionary Transcriptomics with R☆45Updated last week
- Transposable element polymorphism identification☆34Updated 5 years ago
- Identify and annotate TE-mediated insertions in long-read sequence data☆43Updated 2 months ago
- ☆51Updated 6 years ago
- CNEFinder: Finding Conserved Non-coding Elements in Genomes☆24Updated 4 years ago
- Pipeline for structural variation detection in cohorts☆51Updated 4 years ago
- Adapters for trimming☆30Updated 6 years ago
- processing 10x genomics reads☆26Updated 5 years ago
- Haplotype and population structure inference using neural networks.☆27Updated 9 months ago
- An R package for estimating poly(A)-tail lengths in Oxford Nanopore RNA and DNA reads.☆54Updated 11 months ago
- Long-read splice alignment with high accuracy☆63Updated last year
- Split-read pipeline for the identification of non-reference TE insertions with TSDs☆25Updated 5 years ago
- Software to assemble contigs/scaffolds into chromosomes using Hi-C data☆28Updated last year
- Pipeline for scaffolding and breaking a genome assembly using 10x genomics linked-reads☆21Updated 3 years ago
- ☆45Updated 8 years ago
- Converting and demultiplexing of PacBio BAM files into gzipped fasta and fastq files.☆38Updated 2 years ago
- This is an unsupported fork of the PacBio blasr aligner. It contains my (very beta) optimizations and new functionality. It may disappea…☆22Updated 6 years ago
- A stand-alone application for constructing websites for visualizing and browsing synteny blocks☆18Updated 4 years ago
- ☆30Updated 4 years ago
- GFF3sort: A Perl Script to sort gff3 files and produce suitable results for tabix tools☆51Updated 5 years ago
- Pipeline for structural variant image curation and analysis.☆48Updated 3 years ago
- R API for browsing, analyzing, and manipulating reference-aligned genome graphs in a GenomicRanges framework☆41Updated this week
- Structural variant merging tool☆54Updated last year
- A software for calculating telomere length☆71Updated 6 years ago
- Python scripts for matching output of Pacific Biosciences IsoSeq RNA-seq pipeline to an annotation file.☆23Updated 10 years ago
- Dot: An interactive dot plot viewer for comparative genomics☆34Updated 2 years ago
- TEMP is a software package for detecting transposable elements (TEs) insertions and excisions from pooled high-throughput sequencing dat…☆22Updated 8 years ago
- Personal diploid genome creation and coordinate conversion☆30Updated 5 months ago
- toolkit to process gtf files☆17Updated 3 years ago
- ☆37Updated 2 years ago