AlexGa / PhylostratigraphyLinks
Pipeline for Phylostratigraphy
☆13Updated 2 years ago
Alternatives and similar repositories for Phylostratigraphy
Users that are interested in Phylostratigraphy are comparing it to the libraries listed below
Sorting:
- Evolutionary Transcriptomics with R☆43Updated 2 weeks ago
- CNEFinder: Finding Conserved Non-coding Elements in Genomes☆24Updated 3 years ago
- Transposable element polymorphism identification☆33Updated 4 years ago
- Identify and annotate TE-mediated insertions in long-read sequence data☆42Updated last week
- toolkit to process gtf files☆17Updated 3 years ago
- ☆28Updated 2 years ago
- MapCaller – An efficient and versatile approach for short-read alignment and variant detection in high-throughput sequenced genomes☆30Updated 4 years ago
- Code for phasing SVs with SNPs☆52Updated 5 years ago
- Snakemake workflow for Illumina RNA-sequencing experiments - extract population genomic signals from RNA-Seq data☆18Updated 2 months ago
- Exact Tandem Repeat Finder (not a TRF replacement)☆49Updated 5 years ago
- microRNA PREdiction From small RNA-seq data☆29Updated 7 years ago
- A stand-alone application for constructing websites for visualizing and browsing synteny blocks☆18Updated 4 years ago
- processing 10x genomics reads☆26Updated 5 years ago
- A pipeline for isoseq☆23Updated 7 years ago
- DETONATE: DE novo TranscriptOme rNa-seq Assembly with or without the Truth Evaluation☆13Updated 9 years ago
- ☆22Updated 6 months ago
- R API for browsing, analyzing, and manipulating reference-aligned genome graphs in a GenomicRanges framework☆40Updated 3 weeks ago
- This is an unsupported fork of the PacBio blasr aligner. It contains my (very beta) optimizations and new functionality. It may disappea…☆21Updated 6 years ago
- Pipeline for structural variant image curation and analysis.☆48Updated 3 years ago
- An R package to identify and classify duplicated genes from whole-genome protein sequence data☆26Updated 3 months ago
- convert a blast output to a bed file☆12Updated 10 years ago
- DNA multiple sequence aligner, official version from Penn State's Miller Lab☆34Updated 6 years ago
- Upscaling SV detection to a multi-population level.☆22Updated 4 years ago
- De novo annotation of young retrotransposons☆48Updated 3 years ago
- TEMP is a software package for detecting transposable elements (TEs) insertions and excisions from pooled high-throughput sequencing dat…☆22Updated 7 years ago
- DensityMap is perl tool for the visualization of features density along chromosomes☆17Updated 3 years ago
- GENE-SWitCH project RNA-Seq analysis pipeline☆26Updated 4 months ago
- Improved Phased Assembler☆28Updated 3 years ago
- A software suite for accurate identification, annotation, translation, and feature characterization of annotate transcripts.☆19Updated 3 years ago
- TideHunter: efficient and sensitive tandem repeat detection from noisy long reads using seed-and-chain☆20Updated last year