macmanes-lab / PAMLLinks
This is code for running Orthofinder -> PAML
☆12Updated 9 years ago
Alternatives and similar repositories for PAML
Users that are interested in PAML are comparing it to the libraries listed below
Sorting:
- Wrapper script to concatenate, align, and construct phylogenetic trees of BUSCOs☆20Updated 6 years ago
- scripts to parse and analyse MCScanX collinearity output☆32Updated 5 years ago
- Scripts for NGS processing☆17Updated 8 years ago
- We developed GenomeSyn as a new tool for constructing and visualizing genome synteny, its novel design and implementation can serve as a …☆30Updated 3 years ago
- ☆21Updated 6 years ago
- Download NCBI assembly genomes with ftp. rsync, ascp☆12Updated 3 years ago
- Program for finding horizontal gene transfer using BLAST result☆11Updated 2 years ago
- Add multiple thread function for genome comparison☆16Updated 4 years ago
- A genome annotation pipeline that use short and long sequencing reads alignments from animal genomes☆30Updated last year
- A Plant Presence/absence Variants Scanner and Pan-genome Construction Pipeline☆27Updated 4 years ago
- Easily construct the ML species tree with single-copy gene shared by different species.☆27Updated 7 years ago
- ☆28Updated 3 years ago
- CAAStools is a bioinformatics toolbox that allows the user to identify and validate CAAS on MSA of orthologous proteins.☆21Updated last year
- scripts for sequence and feature conversion, annotation, analysis ...☆28Updated 8 months ago
- Guide through code for a Minimmap2 genome alignment and a seq-seq-pan pan-genome alignment with visualizations in R. The tutorial present…☆19Updated 6 months ago
- BUSCOMP: BUSCO Compiler and Comparison tool☆21Updated last year
- Generate pan-gene sets, given a collection of genome assemblies and corresponding gene models.☆17Updated 3 months ago
- A high performance tool to identify orthologs and paralogs across genomes.☆27Updated 2 years ago
- ☆29Updated 2 years ago
- ☆26Updated 4 years ago
- Pipeline to detect PAVs (presence/absence variations) in genome comparison using whole genome alignment.☆29Updated 7 years ago
- An R package to identify and classify duplicated genes from whole-genome protein sequence data☆28Updated 2 months ago
- A box of genomics tools☆21Updated 5 years ago
- An algorithm for centromere assembly using long error-prone reads☆25Updated 4 years ago
- ☆31Updated 5 years ago
- Phylogenetic Analysis of Long Terminal Repeat Retrotransposons☆18Updated 3 years ago
- Workflows for correcting and scaffolding long-read (PacBio, nanopore) genome assemblies using optical mapping and/or Dovetail Hi-C data☆20Updated 5 years ago
- The GitHub repository for the A. thaliana pan-NLR'ome project.☆18Updated 6 years ago
- Generating UTRs from SHort Reads☆12Updated 5 years ago
- CAMSA: a tool for Comparative Analysis and Merging of Scaffold Assemblies☆24Updated 5 years ago