R and Python scripts used to simulate gene trees under coalescent model and detect gene flow using triple frequency
☆15Dec 15, 2022Updated 3 years ago
Alternatives and similar repositories for Coalescent_simulation_and_gene_flow_detection
Users that are interested in Coalescent_simulation_and_gene_flow_detection are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ASTRAL for PaRalogs and Orthologs☆22Sep 13, 2022Updated 3 years ago
- Phylogenetic iDentification of Subgenomes☆10Jul 7, 2022Updated 3 years ago
- Alignment-Based Sequence extraction☆15Feb 14, 2022Updated 4 years ago
- Bash scripts for analysis of Hyb-Seq data (from raw reads to species trees/networks)☆20Mar 20, 2026Updated last week
- R package for analysis of hybrids and hybrid zones☆21Dec 30, 2023Updated 2 years ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- Visualizing gene tree conflict using Phyparts, and ETE3☆14Jun 17, 2023Updated 2 years ago
- Quartet Sampling method for phylogenetic branch support evaluation☆19Feb 26, 2024Updated 2 years ago
- DFOIL: Introgression Testing for Five Taxa☆33May 15, 2021Updated 4 years ago
- Accurate Species TRee ALgorithm☆275Apr 1, 2024Updated last year
- Topology weighting by iterative sampling of sub-trees☆86Jan 5, 2025Updated last year
- Semi-Automatic Taxonomy Improvement and Validation Algorithm☆20Jan 8, 2024Updated 2 years ago
- ☆44Sep 5, 2023Updated 2 years ago
- Synteny matrix representation with maximum likelihood pipeline☆16Jul 7, 2021Updated 4 years ago
- ☆15Jan 19, 2022Updated 4 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting with the flexibility to host WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Cloudways by DigitalOcean.
- Implementation of the TreeShrink problem☆55Sep 13, 2024Updated last year
- A tool to extract and visualize the results of CAFE (Computational Analysis of gene Family Evolution)☆63Sep 5, 2019Updated 6 years ago
- BioGeography with Bayesian (and likelihood) Evolutionary Analysis with R Scripts☆72Mar 14, 2026Updated 2 weeks ago
- ☆14Mar 17, 2026Updated last week
- ☆23Mar 15, 2026Updated 2 weeks ago
- PhyloSuite is an integrated and scalable desktop platform for streamlined molecular sequence data management and evolutionary phylogeneti…☆172Feb 16, 2026Updated last month
- Computational Analysis of Gene Expression Evolution☆45Aug 19, 2025Updated 7 months ago
- A haplotype analysis toolkit for natural variation study.☆31Oct 3, 2023Updated 2 years ago
- Genome-wide scan for balancing selection using beta statistic☆32Apr 26, 2023Updated 2 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Python Breeding Optimizer and Simulator: A Python library for simulating and optimizing breeding pipelines.☆12Dec 10, 2024Updated last year
- Python library to identify Identical By State regions☆22Mar 19, 2023Updated 3 years ago
- A tool for divide-and-conquer tree estimation via a shared distance matrix☆10Mar 19, 2019Updated 7 years ago
- Pipeline to detect PAVs (presence/absence variations) in genome comparison using whole genome alignment.☆29Mar 5, 2018Updated 8 years ago
- Application of pan-genome for population☆116Oct 26, 2025Updated 5 months ago
- A box of genomics tools☆22Aug 26, 2020Updated 5 years ago
- Phylogenetic Likelihood Library 2 - experimental☆11May 12, 2025Updated 10 months ago
- Fast calculation of Patterson's D (ABBA-BABA) and the f4-ratio statistics across many populations/species☆186Dec 19, 2024Updated last year
- ☆31Apr 7, 2025Updated 11 months ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- ☆22Oct 31, 2025Updated 4 months ago
- phylogenetics tools for linux (and other mostly posix compliant) computers☆123Jan 17, 2025Updated last year
- Accurate Species Tree EstimatoR: a family of optimation algorithms for species tree inference (including ASTRAL & CASTER)☆232Updated this week
- Hybrid error correction approach for long reads using overlap graph☆11Sep 26, 2023Updated 2 years ago
- Hybridization detection using phylogenetic invariants☆52Oct 29, 2024Updated last year
- association analysis of distance matrices using gradient forest approach☆16Oct 7, 2025Updated 5 months ago
- An Example of Subgenome Phasing for Complex Allopolyploidy☆15Nov 6, 2025Updated 4 months ago