mrmckain / PhyDSLinks
Phylogenetic iDentification of Subgenomes
☆10Updated 3 years ago
Alternatives and similar repositories for PhyDS
Users that are interested in PhyDS are comparing it to the libraries listed below
Sorting:
- ☆24Updated last year
- Likelihood-based Selective Sweep Detection☆40Updated last year
- Reconstruction of ancestral genome maps☆16Updated 7 years ago
- ☆40Updated 2 years ago
- This python script can be used to detect Whole-genome duplication (WGD) with the dS based method.☆25Updated 6 years ago
- ☆27Updated 5 months ago
- reference-free estimation of ploidy level from whole genome sequencing data based on de Bruijn graph☆17Updated 2 years ago
- Toolkit for evolutionary analyses of linkage groups☆32Updated last year
- We developed GenomeSyn as a new tool for constructing and visualizing genome synteny, its novel design and implementation can serve as a …☆29Updated 3 years ago
- R package to draw syntenic plots in 3 different styles☆42Updated 3 weeks ago
- ☆21Updated last year
- B73Ab10 genome assembly methods☆16Updated 3 years ago
- Centromics: visualing centromeres with multiple omics data☆24Updated 6 months ago
- This repository contains relevant code and explanation for ”Leveraging a phased pangenome to design ideal haplotypes for hybrid potato br…☆32Updated 7 months ago
- Analyses of sex chromosome evolution in songbirds☆16Updated 6 years ago
- A genome assembly assessment pipeline.☆37Updated last year
- A quick user guide for de novo transposable element (TE) library generation and TE screening. Utilising; the Extensive de novo TE Annotat…☆27Updated 2 years ago
- ☆27Updated 2 years ago
- A shiny application to visualize MCscan result☆37Updated 2 years ago
- Easily construct the ML species tree with single-copy gene shared by different species.☆27Updated 6 years ago
- ☆42Updated last year
- The IntroBlocker ancestry inference algorithm☆15Updated last year
- The GitHub repository for the A. thaliana pan-NLR'ome project.☆18Updated 6 years ago
- Python script calculating transposable element density for all genes in a genome. Publication: https://mobilednajournal.biomedcentral.com…☆34Updated 11 months ago
- Dynamic Elongation of a Genome Assembly Path☆22Updated last year
- The code used in the manuscript titled "Gene duplication and evolution in recurring polyploidization-diploidization cycles in plants".☆28Updated 4 years ago
- HELIANO is a software for detection and classification of Helitron-like elements.☆30Updated 3 months ago
- ☆12Updated 2 years ago
- scripts for the project of seven thaliana genomes assembly☆41Updated 4 years ago
- Genome Annotation Pipeline☆36Updated last year