Alternatives and similar repositories for PhyDS

Users that are interested in PhyDS are comparing it to the libraries listed below

• cchauve / ANGeS
  Reconstruction of ancestral genome maps
  ☆16Updated 7 years ago
• jkimlab / DESCHRAMBLER
  ☆24Updated last year
• tangerzhang / calc_switchErr
  ☆27Updated 2 months ago
• A-J-F-Mackintosh / syngraph
  Toolkit for evolutionary analyses of linkage groups
  ☆31Updated 11 months ago
• dawelab / Ab10-Assembly
  B73Ab10 genome assembly methods
  ☆16Updated 3 years ago
• harris-2374 / THEx
  Tree House Explorer (THEx) is a novel genome browser for exploring phylogenetic and genomic data in one succinct place.
  ☆14Updated last year
• esrice / hic-pipeline
  A pipeline for scaffolding a genome assembly using Hi-C
  ☆13Updated 2 years ago
• clemgoub / rm2gff3
  Convert RepeatMasker ".out" file into a gff3 with colors!!!
  ☆21Updated 4 years ago
• almeidasilvaf / doubletrouble
  An R package to identify and classify duplicated genes from whole-genome protein sequence data
  ☆26Updated 3 months ago
• amsession / Kmer-based-Subgenome-Mapping
  ☆21Updated 10 months ago
• nbedelman / DiscovarCompGenomics
  ☆12Updated 5 years ago
• ChenHuaLab / CEGA
  Inferring natural selection by comparative population genomic analysis across species
  ☆23Updated last year
• lurebgi / BOPsexChr
  Analyses of sex chromosome evolution in songbirds
  ☆16Updated 6 years ago
• thamala / PBScan
  Selection outlier scan with population branch statistic
  ☆13Updated last year
• Farre-lab / syntenyPlotteR
  R package to draw syntenic plots in 3 different styles
  ☆41Updated last year
• zhangrengang / Centromics
  Centromics: visualing centromeres with multiple omics data
  ☆22Updated 3 months ago
• rivasiker / autocoalhmm
  Automated pipeline for running CoalHMM
  ☆13Updated last year
• SwallowGenomics / BarnSwallow
  ☆12Updated 2 years ago
• Zhanmengtao / bin
  scripts
  ☆16Updated 6 years ago
• sanger-tol / yahs
  Yet another Hi-C scaffolding tool
  ☆20Updated 8 months ago
• lmcai / Coalescent_simulation_and_gene_flow_detection
  R and Python scripts used to simulate gene trees under coalescent model and detect gene flow using triple frequency
  ☆10Updated 2 years ago
• MorrellLAB / BAD_Mutations
  Deleterious mutation prediction pipeline
  ☆13Updated 6 months ago
• simonhmartin / asynt
  Genome alignment and synteny plots
  ☆30Updated 2 years ago
• kavonrtep / dante
  Domain based annotation of transposable elements
  ☆19Updated last month
• wtsi-hpag / scanPAV
  Pipeline to detect PAVs (presence/absence variations) in genome comparison using whole genome alignment.
  ☆29Updated 7 years ago
• Zhuxitong / ppsPCP
  A Plant Presence/absence Variants Scanner and Pan-genome Construction Pipeline
  ☆27Updated 4 years ago
• HuffordLab / Wang_et_al._Demography
  Repository for the 2017 Genome Biology publication, "The interplay of demography and selection during maize domestication and expansion"
  ☆17Updated 4 years ago
• baduelp / public
  ☆16Updated 8 months ago
• LAILAB-CAU / update-Mo17
  ☆25Updated 2 years ago
• mcsimenc / PhyLTR
  Phylogenetic Analysis of Long Terminal Repeat Retrotransposons
  ☆17Updated 2 years ago