fenghen360 / BLAST2OGMSALinks
Whole organelle genome-wide alignment construction method, which ultilizes BLAST tool, to facilitate phylogeny analysis
☆11Updated 7 years ago
Alternatives and similar repositories for BLAST2OGMSA
Users that are interested in BLAST2OGMSA are comparing it to the libraries listed below
Sorting:
- HomBlocks: A multiple-alignment construction pipeline for organelle phylogenomics based on locally collinear block searching☆34Updated 8 years ago
- TreeBeST: Tree Building guided by Species Tree☆14Updated 14 years ago
- ☆16Updated last month
- Pipeline to detect PAVs (presence/absence variations) in genome comparison using whole genome alignment.☆29Updated 7 years ago
- ☆28Updated 2 years ago
- Gene copy number prediction from k-mer frequencies☆13Updated last year
- Consensus genome annotation using OMA☆26Updated 2 months ago
- Human pan-genome analysis pipeline☆30Updated 5 years ago
- SAMStat displays various properties of next-generation sequencing reads stored in SAM/BAM format.☆24Updated 2 years ago
- Simultaneous multi-sample transcript assembler for RNA-seq data☆17Updated 8 months ago
- ORF prediction using python☆11Updated 4 years ago
- Scripts to do haplotype analysis on pan genomes.☆21Updated 4 years ago
- FastRemap, a C++ tool for quickly remapping reads between genome assemblies based on the commonly used CrossMap tool. Link to paper: http…☆26Updated 3 years ago
- Long read QC, assembly and scaffolding pipeline☆13Updated 5 years ago
- This is the Haplotypo repository☆20Updated last year
- ☆14Updated last year
- CNEFinder: Finding Conserved Non-coding Elements in Genomes☆24Updated 4 years ago
- ☆11Updated 3 months ago
- MODAS: Multi-Omics Data Association Study toolkit☆21Updated 9 months ago
- Nanopore Real-Time Analysis Tool☆15Updated 11 months ago
- A reliable gap filling pipeline for draft genomes☆11Updated 5 years ago
- Converting and demultiplexing of PacBio BAM files into gzipped fasta and fastq files.☆37Updated 2 years ago
- HAT is a set of tools for calling de novo variants from whole-genome sequencing data.☆24Updated last year
- A JBrowse plugin to view multiple alignment format (MAF) files☆26Updated last year
- ☆26Updated 4 years ago
- DETONATE: DE novo TranscriptOme rNa-seq Assembly with or without the Truth Evaluation☆13Updated 9 years ago
- A Python package for testing evolutionary hypotheses in genome-wide approaches.☆31Updated 4 years ago
- Split-read pipeline for the identification of non-reference TE insertions with TSDs☆25Updated 4 years ago
- The Vertebrate Genomes Project Mitogenome Assembly Pipeline☆19Updated 2 years ago
- Phylogenetic Analysis of Long Terminal Repeat Retrotransposons☆18Updated 2 years ago