Whole organelle genome-wide alignment construction method, which ultilizes BLAST tool, to facilitate phylogeny analysis
☆11May 7, 2018Updated 8 years ago
Alternatives and similar repositories for BLAST2OGMSA
Users that are interested in BLAST2OGMSA are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- HomBlocks: A multiple-alignment construction pipeline for organelle phylogenomics based on locally collinear block searching☆36Aug 7, 2017Updated 9 years ago
- An R package with toolkits for tong's friends☆11Mar 18, 2025Updated last year
- DIAMOND online documentation☆10Sep 2, 2020Updated 6 years ago
- Extremely fast BAM depth calculation for WGS, exome, or targeted sequencing☆13Jan 25, 2019Updated 7 years ago
- Dot2dot: Accurate Whole-Genome Tandem Repeats Discovery☆11Oct 5, 2022Updated 3 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- A stand-alone application for constructing websites for visualizing and browsing synteny blocks☆18May 30, 2026Updated 3 months ago
- Nucmer from Mummer3 followed by ggplot for nicer and more customisable genome alignment plots.☆12Feb 25, 2021Updated 5 years ago
- Evolutionary Bioinformatics Toolkit (EBT)☆11Jul 14, 2020Updated 6 years ago
- Converts snpeff annotations into MAF☆11Aug 23, 2024Updated 2 years ago
- ChIP-seq DC and QC Pipeline☆36Mar 19, 2021Updated 5 years ago
- parallelLastz: Running Lastz in parallel☆18Sep 13, 2026Updated last week
- ☆13Jan 23, 2020Updated 6 years ago
- Add multiple thread function for genome comparison☆17Sep 29, 2021Updated 4 years ago
- ☆57Jun 12, 2025Updated last year
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- ☆16Jan 6, 2022Updated 4 years ago
- Pinpoints the mutation favored by selection☆36Nov 2, 2021Updated 4 years ago
- VIGOR4☆23Aug 15, 2025Updated last year
- Main scripts and commands used to analyze goat population genetic and domestication☆19Mar 25, 2019Updated 7 years ago
- Parallel Genomic evaluations in R☆18Sep 26, 2024Updated last year
- A fuzzy Bruijn graph approach to long noisy reads assembly☆39Mar 15, 2017Updated 9 years ago
- ExOrthist: a pipeline to extract exon orthologies at any evolutionary distance.☆26Dec 5, 2024Updated last year
- This is a phylogeny workflow for batch submission to HPC cluster built with Slurm queue manager☆12Mar 19, 2024Updated 2 years ago
- TreeBeST: Tree Building guided by Species Tree☆14Feb 17, 2011Updated 15 years ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- ☆16May 7, 2023Updated 3 years ago
- my commonly used perl script☆20Aug 28, 2020Updated 6 years ago
- calling SVs from Blasr contig level alignments☆54Mar 9, 2018Updated 8 years ago
- Calculate dN/dS ratio precisely (Ka/Ks) using a codon-by-codon counting method.☆26Apr 30, 2018Updated 8 years ago
- Perl scripts for working with the GFF format☆16Aug 24, 2011Updated 15 years ago
- Various bioinformatics tools☆20Oct 29, 2024Updated last year
- Bayesian Multi-Trait Multi-Environment for genomic selection[R package] [Dev version]☆19Aug 6, 2023Updated 3 years ago
- circos pipeline☆20May 8, 2021Updated 5 years ago
- CAVA (Clinical Annotation of VAriants)☆14Sep 28, 2018Updated 7 years ago
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- plot genome alignment synteny☆21May 25, 2020Updated 6 years ago
- ☆13May 2, 2018Updated 8 years ago
- MUltiScale enrIchment Calling for ChIP-Seq Datasets☆23Mar 14, 2019Updated 7 years ago
- PanGenomePipeline☆16Apr 10, 2024Updated 2 years ago
- ggtree version of plotTree.R☆18Nov 12, 2018Updated 7 years ago
- fastx-utils using klib☆19Sep 1, 2020Updated 6 years ago
- 学习笔记:我的第一个github仓库☆58Jan 13, 2021Updated 5 years ago