Alternatives and similar repositories for NGS_data_processing

Users that are interested in NGS_data_processing are comparing it to the libraries listed below

• schneebergerlab / AMPRIL-genomes
  scripts for the project of seven thaliana genomes assembly
  ☆42Updated 4 years ago
• dongwei1220 / EasySpeciesTree
  Easily construct the ML species tree with single-copy gene shared by different species.
  ☆27Updated 7 years ago
• molevol-ub / bitacora
  BITACORA: A Bioinformatics tool for gene family annotation
  ☆51Updated 2 weeks ago
• Nextomics / pipeline-for-isoseq
  A pipeline for isoseq
  ☆23Updated 7 years ago
• popgenome / lettuce2020
  Codes for the lettuce resequencing project in 2020
  ☆31Updated 4 years ago
• xiekunwhy / bsa
  Bulked-Segregant Analysis using vcf file with or without parents
  ☆31Updated last year
• robinvanderlee / positive-selection
  Scripts and procedures for detecting positively selected genes and codons in primates
  ☆21Updated 5 years ago
• baozg / assembly-annotation-pipeline
  Plant genome assembly and annotation pipeline using snakemake
  ☆51Updated 7 months ago
• qiao-xin / Scripts_for_GB
  The code used in the manuscript titled "Gene duplication and evolution in recurring polyploidization-diploidization cycles in plants".
  ☆29Updated 4 years ago
• wjian8 / psvcp_v1.01
  Pan-genome Construction and Population Structure Variation Calling pipeline
  ☆45Updated last year
• hewm2008 / VCF2Dis
  VCF2Dis: an ultra-fast and efficient tool to calculate pairwise genetic distance and construct population phylogeny from VCF files
  ☆51Updated 4 months ago
• drostlab / LTRpred
  De novo annotation of young retrotransposons
  ☆48Updated 3 years ago
• chenym1 / genetribe
  A tool for performing collinearity-incorporating homology inference
  ☆33Updated 2 years ago
• kentnf / iTAK
  iTAK
  ☆45Updated last year
• pinbo / SNP_Primer_Pipeline
  ☆21Updated 3 years ago
• obenno / ShinySyn
  A shiny application to visualize MCscan result
  ☆38Updated 3 years ago
• JinfengChen / Scripts
  ☆75Updated 5 years ago
• tsackton / ratite-genomics
  Scripts and other material for the assembly and analysis of ratite genomes.
  ☆26Updated 2 years ago
• xuzhougeng / myscripts
  ☆61Updated last year
• JiangYuLab / CNVcaller
  ☆42Updated last year
• Yandell-Lab / maker
  Genome Annotation Pipeline
  ☆42Updated last year
• hillerlab / GeneLossPipe
  ☆25Updated 3 years ago
• tanghaibao / allhic
  Genome scaffolding based on HiC data in heterozygous and high ploidy genomes
  ☆60Updated 11 months ago
• Wendellab / CisTransRegulation
  Project description and analytic scripts for cis/trans regulation of fiber development in G. hirsutum
  ☆17Updated 2 years ago
• wk8910 / bio_tools
  Useful bioinformatic scripts
  ☆58Updated last year
• ShiuLab / PseudogenePipeline
  ☆41Updated 2 years ago
• baoxingsong / GEAN
  This toolkit deals with GEnomic sequence and genome structure ANnotation files between inbreeding lines and species.
  ☆46Updated 2 years ago
• phasegenomics / juicebox_scripts
  A collection of scripts for working with Hi-C data, Juicebox, and other genomic file formats
  ☆69Updated 4 years ago
• dwinter / repeatR
  read and analyse RepeatMasker output
  ☆27Updated 2 years ago
• INTABiotechMJ / MITE-Tracker
  MITE Tracker: An accurate approach to identify miniature inverted-repeat transposable elements in large genomes
  ☆20Updated last year