Tool set for processing fasta/fastq/table formated data. Usually they are perl scripts.
☆56Mar 6, 2026Updated last week
Alternatives and similar repositories for NGS_data_processing
Users that are interested in NGS_data_processing are comparing it to the libraries listed below
Sorting:
- ☆41Jun 8, 2023Updated 2 years ago
- From the comparison of two extant genomes and corresponding gene families, PhylDiag detects conserved segments, i.e. segments of chromoso…☆15Aug 7, 2023Updated 2 years ago
- ☆76Apr 23, 2020Updated 5 years ago
- R package for binmap☆12Aug 3, 2023Updated 2 years ago
- SINE annotation tool for plant genomes☆19Jan 21, 2024Updated 2 years ago
- Easily construct the ML species tree with single-copy gene shared by different species.☆27Oct 26, 2018Updated 7 years ago
- ☆11Updated this week
- Killifish genomics scripts☆12Feb 19, 2021Updated 5 years ago
- A quick user guide for de novo transposable element (TE) library generation and TE screening. Utilising; the Extensive de novo TE Annotat…☆27Dec 7, 2022Updated 3 years ago
- ☆64Mar 14, 2024Updated 2 years ago
- Long-reads Gap-free Chromosome-scale Assembler☆79Mar 21, 2023Updated 2 years ago
- Annotate Olfactory receptor CDS from genome☆10Apr 29, 2023Updated 2 years ago
- Transcripts annotation and GO enrichment Fisher tests☆27Apr 28, 2023Updated 2 years ago
- iTAK☆48May 22, 2024Updated last year
- This python script can be used to detect Whole-genome duplication (WGD) with the dS based method.☆26Feb 22, 2019Updated 7 years ago
- An ultra-fast and efficient tool for high frequency kmer sequencing reads extraction☆19Mar 6, 2024Updated 2 years ago
- ☆16Jul 29, 2023Updated 2 years ago
- A pipeline used to identify different modes of duplicated gene pairs☆119Jul 22, 2025Updated 7 months ago
- Codes for Vmap1.1 and Vmap3☆11Jan 5, 2026Updated 2 months ago
- ☆21Sep 22, 2022Updated 3 years ago
- Best practices and workflow for genome annotation☆79Apr 14, 2025Updated 11 months ago
- scripts and intermediate files used to annotate TEs in Jiao et al.☆34Apr 12, 2018Updated 7 years ago
- Phylogenetic iDentification of Subgenomes☆10Jul 7, 2022Updated 3 years ago
- ☆15Jul 21, 2022Updated 3 years ago
- ☆26Jan 26, 2026Updated last month
- ☆29Apr 16, 2023Updated 2 years ago
- Genome alignment and synteny plots☆33Jun 5, 2023Updated 2 years ago
- De novo annotation of young retrotransposons☆47Apr 12, 2022Updated 3 years ago
- Genome annotation pipeline☆66Jun 25, 2024Updated last year
- ☆12Apr 10, 2021Updated 4 years ago
- Neural network classification of TE☆97Oct 9, 2025Updated 5 months ago
- The code used in the manuscript titled "Gene duplication and evolution in recurring polyploidization-diploidization cycles in plants".☆29Mar 19, 2021Updated 5 years ago
- Main scripts and commands used to analyze goat population genetic and domestication☆19Mar 25, 2019Updated 6 years ago
- Figures for the CHM13 T2T SD paper.☆10Sep 12, 2021Updated 4 years ago
- Custom scripts for monotreme genome project☆19Jan 12, 2021Updated 5 years ago
- Long Read Based SV Calling Tools Analysis☆14Mar 22, 2024Updated last year
- Pipeline to detect PAVs (presence/absence variations) in genome comparison using whole genome alignment.☆29Mar 5, 2018Updated 8 years ago
- A stand-alone application for constructing websites for visualizing and browsing synteny blocks☆18Jan 11, 2021Updated 5 years ago
- R package to draw syntenic plots in 3 different styles☆45Feb 2, 2026Updated last month