Alternatives and similar repositories for wgd

Users that are interested in wgd are comparing it to the libraries listed below

• 4ureliek / Parsing-RepeatMasker-Outputs
  Few scripts facilitating the extraction of info from Repeat Masker .out files
  ☆80Updated 4 years ago
• zhangrengang / TEsorter
  TEsorter: an accurate and fast method to classify LTR-retrotransposons in plant genomes
  ☆96Updated 3 months ago
• sujaikumar / assemblage
  Tools for working with second gen assemblies, fasta sequences, etc
  ☆93Updated 8 years ago
• kiranbandi / synvisio
  SynVisio is an interactive multiscale visualization tool that lets you explore the results of McScanX a popular synteny and collinearity …
  ☆83Updated last year
• clemgoub / dnaPipeTE
  dnaPipeTE (for de-novo assembly & annotation Pipeline for Transposable Elements), is a pipeline designed to find, annotate and quantify T…
  ☆56Updated 2 years ago
• mapleforest / HaploMerger2
  ☆44Updated 8 years ago
• dwinter / pafr
  Read, manipulate and visualize 'Pairwise mApping Format' data in R
  ☆74Updated 4 years ago
• chenlianfu / geta
  ☆79Updated 10 months ago
• steuernb / NLR-Annotator
  NLR-Annotator upload
  ☆66Updated last year
• ArimaGenomics / mapping_pipeline
  Mapping pipeline for data generated using Arima-HiC
  ☆77Updated last year
• rhysf / Synima
  Synteny Imager
  ☆62Updated 9 months ago
• liangclab / HERA
  ☆77Updated 5 years ago
• xiaochuanle / MECAT2
  ☆71Updated 5 years ago
• mahulchak / svmu
  A program to call variants from genome alignment
  ☆80Updated last month
• aubombarely / Organelle_PBA
  A software to assemble chloroplast and mitochodrial genomes using PacBio data
  ☆39Updated 5 years ago
• DyogenIBENS / Agora
  Algorithm For Gene Order Reconstruction in Ancestors
  ☆75Updated 7 months ago
• YaoZhou89 / TGG
  tomato graph pangenome
  ☆82Updated 2 years ago
• wk8910 / bio_tools
  Useful bioinformatic scripts
  ☆56Updated 6 months ago
• tbenavi1 / genomescope2.0
  Reference-free profiling of polyploid genomes
  ☆116Updated 10 months ago
• starskyzheng / panpop
  Application of pan-genome for population
  ☆105Updated 7 months ago
• EVidenceModeler / EVidenceModeler
  source code for EVM
  ☆112Updated 6 months ago
• c-zhou / oatk
  A organelle de novo genome assembly toolkit
  ☆59Updated 3 months ago
• fanagislab / GCE
  GCE (genomic charactor estimator) is a bayes model based method to estimate the genome size, genomic repeat content and the heterozygsis…
  ☆50Updated 5 years ago
• alekseyzimin / EviAnn_release
  This is the standalone version of the EviAnn pipeline
  ☆91Updated this week
• abacus-gene / paml-tutorial
  paml documentation and tutorials
  ☆56Updated 2 weeks ago
• Gaius-Augustus / TSEBRA
  TSEBRA: Transcript Selector for BRAKER
  ☆47Updated 6 months ago
• BGI-shenzhen / VCF2Dis
  VCF2Dis: A new simple and efficient software to calculate p-distance matrix and construct population phylogeny based Variant Call Forma…
  ☆96Updated 3 weeks ago
• SAMtoBAM / MUMandCo
  MUM&Co is a simple bash script that uses Whole Genome Alignment information provided by MUMmer (only v4) to detect Structural Variation
  ☆70Updated 2 months ago
• wurmlab / flo
  Same species annotation lift over pipeline.
  ☆97Updated last year
• colindaven / awesome-pangenomes
  A list of software for pangenomics
  ☆115Updated 3 weeks ago