Alternatives and similar repositories for pan-nlrome:

Users that are interested in pan-nlrome are comparing it to the libraries listed below

• Uauy-Lab / pangenome-haplotypes
  Scripts to do haplotype analysis on pan genomes.
  ☆21Updated 4 years ago
• LAILAB-CAU / update-Mo17
  ☆24Updated 2 years ago
• GaoLei-bio / SV
  ☆14Updated 3 years ago
• mcsimenc / PhyLTR
  Phylogenetic Analysis of Long Terminal Repeat Retrotransposons
  ☆17Updated 2 years ago
• oushujun / PopTEvo
  Study of TE evolution in a population of genomes
  ☆9Updated last year
• xuzhougeng / wgap
  Whole Genome Annotation Pipeline
  ☆16Updated last year
• sanger-tol / yahs
  Yet another Hi-C scaffolding tool
  ☆19Updated 6 months ago
• caasivfbioinfo / Bol_pangenome
  ☆14Updated last year
• almeidasilvaf / doubletrouble
  An R package to identify and classify duplicated genes from whole-genome protein sequence data
  ☆25Updated last month
• zlguu / Rice_Heterosis
  ☆15Updated last year
• simonhmartin / asynt
  Genome alignment and synteny plots
  ☆30Updated last year
• YaoZhou89 / WGSc
  ☆15Updated 3 years ago
• liangjiaoxue / PythonNGSTools
  Scripts for NGS processing
  ☆17Updated 7 years ago
• xhhuanglab / QTN_scripts
  ☆9Updated 4 years ago
• wtsi-hpag / scanPAV
  Pipeline to detect PAVs (presence/absence variations) in genome comparison using whole genome alignment.
  ☆29Updated 7 years ago
• dawelab / Ab10-Assembly
  B73Ab10 genome assembly methods
  ☆16Updated 3 years ago
• yiliao1022 / LASTZ_SV_pipeline
  ☆15Updated 5 years ago
• wheatgenetics / owwc
  repository for code used in analysis of open wild wheat consortium
  ☆16Updated 3 years ago
• mcstitzer / maize_genomic_ecosystem
  ☆11Updated 2 years ago
• pdimens / LepWrap
  A pipeline to use Lep-Map3 to create linkage maps and LepAnchor for anchoring and orienting genome assemblies with said linkage maps.
  ☆13Updated last year
• biozzq / goat-population-genetic
  Main scripts and commands used to analyze goat population genetic and domestication
  ☆20Updated 6 years ago
• schneebergerlab / AMPRIL-genomes
  scripts for the project of seven thaliana genomes assembly
  ☆38Updated 3 years ago
• schneebergerlab / GameteBinning_tetraploid
  This is used to achieve haplotype-resolved assembly of tetraploid genomes using gamete sequencings
  ☆12Updated 3 years ago
• jdaron / CLARI-TE
  ☆10Updated 10 years ago
• Farre-lab / syntenyPlotteR
  R package to draw syntenic plots in 3 different styles
  ☆40Updated last year
• itojal / hot_scan
  hot_scan is a free software to detect genomic regions unusually rich (hotspot) in a given pattern via scan statistics
  ☆7Updated 11 years ago
• clemgoub / rm2gff3
  Convert RepeatMasker ".out" file into a gff3 with colors!!!
  ☆21Updated 4 years ago
• phasegenomics / matlock
  Simple tools for working with Hi-C data
  ☆17Updated 6 years ago
• legumeinfo / pandagma
  Generate pan-gene sets, given a collection of genome assemblies and corresponding gene models.
  ☆17Updated 3 weeks ago
• GonzalezLab / T-lex3
  ☆15Updated 4 years ago