Alternatives and similar repositories for pan-nlrome:

Users that are interested in pan-nlrome are comparing it to the libraries listed below

• Uauy-Lab / pangenome-haplotypes
  Scripts to do haplotype analysis on pan genomes.
  ☆21Updated 4 years ago
• LAILAB-CAU / update-Mo17
  ☆23Updated last year
• GaoLei-bio / SV
  ☆14Updated 3 years ago
• almeidasilvaf / doubletrouble
  An R package to identify and classify duplicated genes from whole-genome protein sequence data
  ☆23Updated last week
• xuzhougeng / wgap
  Whole Genome Annotation Pipeline
  ☆15Updated last year
• sanger-tol / yahs
  Yet another Hi-C scaffolding tool
  ☆20Updated 4 months ago
• caasivfbioinfo / Bol_pangenome
  ☆14Updated last year
• wheatgenetics / owwc
  repository for code used in analysis of open wild wheat consortium
  ☆16Updated 3 years ago
• mcsimenc / PhyLTR
  Phylogenetic Analysis of Long Terminal Repeat Retrotransposons
  ☆17Updated 2 years ago
• clemgoub / rm2gff3
  Convert RepeatMasker ".out" file into a gff3 with colors!!!
  ☆20Updated 4 years ago
• dawelab / Ab10-Assembly
  B73Ab10 genome assembly methods
  ☆16Updated 3 years ago
• wtsi-hpag / scanPAV
  Pipeline to detect PAVs (presence/absence variations) in genome comparison using whole genome alignment.
  ☆29Updated 7 years ago
• yiliao1022 / LASTZ_SV_pipeline
  ☆16Updated 5 years ago
• jkimlab / mySyntenyPortal
  A stand-alone application for constructing websites for visualizing and browsing synteny blocks
  ☆18Updated 4 years ago
• xhhuanglab / QTN_scripts
  ☆9Updated 4 years ago
• YaoZhou89 / WGSc
  ☆16Updated 3 years ago
• reubwn / collinearity
  scripts to parse and analyse MCScanX collinearity output
  ☆31Updated 5 years ago
• liangjiaoxue / PythonNGSTools
  Scripts for NGS processing
  ☆17Updated 7 years ago
• jdaron / CLARI-TE
  ☆10Updated 10 years ago
• andreaminio / HaploSync
  Tools for haplotype-wise reconstruction of pseudomolecules
  ☆20Updated 5 months ago
• LeanQ / SPLITREADER
  Split-read pipeline for the identification of non-reference TE insertions with TSDs
  ☆24Updated 4 years ago
• schneebergerlab / AMPRIL-genomes
  scripts for the project of seven thaliana genomes assembly
  ☆38Updated 3 years ago
• WenchaoLin / GCcalc
  Calculate circos format data of GC content and GC skew from genome data.
  ☆12Updated 10 years ago
• guokai8 / CandiHap
  Build haplotye and generate figures
  ☆18Updated 3 years ago
• mcstitzer / maize_genomic_ecosystem
  ☆11Updated 2 years ago
• simonhmartin / asynt
  Genome alignment and synteny plots
  ☆29Updated last year
• baduelp / public
  ☆16Updated 5 months ago
• aubombarely / GenoToolBox
  A box of genomics tools
  ☆21Updated 4 years ago
• biozzq / goat-population-genetic
  Main scripts and commands used to analyze goat population genetic and domestication
  ☆20Updated 5 years ago