hillerlab / GeneLossPipe
☆24Updated 2 years ago
Alternatives and similar repositories for GeneLossPipe:
Users that are interested in GeneLossPipe are comparing it to the libraries listed below
- scripts for the project of seven thaliana genomes assembly☆38Updated 3 years ago
- Scripts and procedures for detecting positively selected genes and codons in primates☆19Updated 4 years ago
- calling SVs from Blasr contig level alignments☆54Updated 7 years ago
- The code used in the manuscript titled "Gene duplication and evolution in recurring polyploidization-diploidization cycles in plants".☆28Updated 4 years ago
- Pan-genome Construction and Population Structure Variation Calling pipeline☆38Updated 6 months ago
- methods for orphan gene prediction paper optimization☆25Updated 3 years ago
- A shiny application to visualize MCscan result☆35Updated 2 years ago
- A tool for performing collinearity-incorporating homology inference☆29Updated last year
- ☆42Updated last year
- Analyses of sex chromosome evolution in songbirds☆15Updated 5 years ago
- Automated pipeline for running CoalHMM☆12Updated last year
- ☆24Updated 7 years ago
- Likelihood-based Selective Sweep Detection☆37Updated last year
- A collection of scripts for working with Hi-C data, Juicebox, and other genomic file formats☆65Updated 3 years ago
- Scripts of population genomics analysis☆35Updated 6 years ago
- PhyloAcc a software to detect the changes of conservation of a genomic region☆30Updated 5 months ago
- Computational Analysis of Gene Expression Evolution☆39Updated this week
- ☆23Updated 3 years ago
- A pipeline for isoseq☆23Updated 6 years ago
- Easily construct the ML species tree with single-copy gene shared by different species.☆25Updated 6 years ago
- ☆42Updated 10 months ago
- ☆22Updated last year
- Codes for the lettuce resequencing project in 2020☆30Updated 3 years ago
- Genome Annotation Pipeline☆35Updated 7 months ago
- Python wrappers for programs that search for transposable elements☆19Updated 8 years ago
- Useful bioinformatic scripts☆54Updated 3 months ago
- ☆39Updated 2 years ago
- Scripts and other material for the assembly and analysis of ratite genomes.☆26Updated 2 years ago
- VCF2Dis: an ultra-fast and efficient tool to calculate pairwise genetic distance and construct population phylogeny from VCF files☆37Updated last week