Alternatives and similar repositories for GeneLossPipe

Users that are interested in GeneLossPipe are comparing it to the libraries listed below

• robinvanderlee / positive-selection
  Scripts and procedures for detecting positively selected genes and codons in primates
  ☆21Updated 4 years ago
• schneebergerlab / AMPRIL-genomes
  scripts for the project of seven thaliana genomes assembly
  ☆41Updated 4 years ago
• qiao-xin / Scripts_for_GB
  The code used in the manuscript titled "Gene duplication and evolution in recurring polyploidization-diploidization cycles in plants".
  ☆28Updated 4 years ago
• Farre-lab / syntenyPlotteR
  R package to draw syntenic plots in 3 different styles
  ☆42Updated 2 months ago
• obenno / ShinySyn
  A shiny application to visualize MCscan result
  ☆37Updated 3 years ago
• zeeev / smartie-sv
  calling SVs from Blasr contig level alignments
  ☆54Updated 7 years ago
• lurebgi / BOPsexChr
  Analyses of sex chromosome evolution in songbirds
  ☆16Updated 6 years ago
• tsackton / linked-selection
  ☆24Updated 8 years ago
• eswlab / orphan-prediction
  methods for orphan gene prediction paper optimization
  ☆25Updated 3 years ago
• dongwei1220 / EasySpeciesTree
  Easily construct the ML species tree with single-copy gene shared by different species.
  ☆27Updated 7 years ago
• alachins / sweed
  Likelihood-based Selective Sweep Detection
  ☆40Updated 2 years ago
• JiangYuLab / CNVcaller
  ☆42Updated last year
• Sunhh / NGS_data_processing
  Tool set for processing fasta/fastq/table formated data. Usually they are perl scripts.
  ☆56Updated 3 weeks ago
• HuffordLab / Maize_NC358
  The repository for codes developed to generated the Maize NC358 assemblies and analyses.
  ☆10Updated 5 years ago
• vgteam / giraffe-sv-paper
  ☆43Updated last year
• wjian8 / psvcp_v1.01
  Pan-genome Construction and Population Structure Variation Calling pipeline
  ☆44Updated last year
• xiekunwhy / bsa
  Bulked-Segregant Analysis using vcf file with or without parents
  ☆31Updated 10 months ago
• hillerlab / GenomeAlignmentTools
  Tools for improving the sensitivity and specificity of genome alignments
  ☆58Updated last year
• molevol-ub / bitacora
  BITACORA: A Bioinformatics tool for gene family annotation
  ☆49Updated 4 months ago
• baozg / assembly-annotation-pipeline
  Plant genome assembly and annotation pipeline using snakemake
  ☆48Updated 5 months ago
• wk8910 / bio_tools
  Useful bioinformatic scripts
  ☆58Updated 11 months ago
• rivasiker / autocoalhmm
  Automated pipeline for running CoalHMM
  ☆13Updated last year
• ShiuLab / PseudogenePipeline
  ☆40Updated 2 years ago
• WenchaoLin / assemblyStatistics
  A simple program for evaluate the assembly of a give genome.
  ☆18Updated 2 years ago
• drostlab / LTRpred
  De novo annotation of young retrotransposons
  ☆48Updated 3 years ago
• sjteresi / TE_Density
  Python script calculating transposable element density for all genes in a genome. Publication: https://mobilednajournal.biomedcentral.com…
  ☆34Updated last year
• ellenbell / FasTE
  A quick user guide for de novo transposable element (TE) library generation and TE screening. Utilising; the Extensive de novo TE Annotat…
  ☆27Updated 2 years ago
• Yandell-Lab / maker
  Genome Annotation Pipeline
  ☆39Updated last year
• chenym1 / genetribe
  A tool for performing collinearity-incorporating homology inference
  ☆33Updated 2 years ago
• jkimlab / DESCHRAMBLER
  ☆24Updated last year