hillerlab / GeneLossPipeLinks
☆24Updated 2 years ago
Alternatives and similar repositories for GeneLossPipe
Users that are interested in GeneLossPipe are comparing it to the libraries listed below
Sorting:
- Scripts and procedures for detecting positively selected genes and codons in primates☆21Updated 4 years ago
- scripts for the project of seven thaliana genomes assembly☆41Updated 4 years ago
- ☆42Updated last year
- The code used in the manuscript titled "Gene duplication and evolution in recurring polyploidization-diploidization cycles in plants".☆28Updated 4 years ago
- Analyses of sex chromosome evolution in songbirds☆16Updated 6 years ago
- Pan-genome Construction and Population Structure Variation Calling pipeline☆42Updated 11 months ago
- Bulked-Segregant Analysis using vcf file with or without parents☆29Updated 8 months ago
- Likelihood-based Selective Sweep Detection☆40Updated last year
- Scripts and other material for the assembly and analysis of ratite genomes.☆26Updated 2 years ago
- A shiny application to visualize MCscan result☆37Updated 2 years ago
- Easily construct the ML species tree with single-copy gene shared by different species.☆27Updated 6 years ago
- Python script calculating transposable element density for all genes in a genome. Publication: https://mobilednajournal.biomedcentral.com…☆34Updated 10 months ago
- A tool for performing collinearity-incorporating homology inference☆32Updated last year
- ☆24Updated 8 years ago
- PhyloAcc a software to detect the changes of conservation of a genomic region☆32Updated 4 months ago
- A personal pipeline to calculate Ka,Ks and Ka/Ks using PAML-yn00 with YN method☆10Updated 6 months ago
- R package to draw syntenic plots in 3 different styles☆42Updated this week
- VCF2Dis: an ultra-fast and efficient tool to calculate pairwise genetic distance and construct population phylogeny from VCF files☆43Updated last week
- Some useful gadgets☆10Updated 3 years ago
- ☆42Updated last year
- Tutorial on using popular tools for learning about population history☆51Updated 7 years ago
- Tool set for processing fasta/fastq/table formated data. Usually they are perl scripts.☆55Updated last week
- Useful bioinformatic scripts☆58Updated 9 months ago
- The GitHub repository for the A. thaliana pan-NLR'ome project.☆17Updated 6 years ago
- Scripts of population genomics analysis☆36Updated 7 years ago
- ☆24Updated last year
- A collection of scripts for working with Hi-C data, Juicebox, and other genomic file formats☆67Updated 4 years ago
- MITE Tracker: An accurate approach to identify miniature inverted-repeat transposable elements in large genomes☆20Updated last year
- Automated pipeline for running CoalHMM☆13Updated last year
- ☆40Updated 2 years ago