Alternatives and similar repositories for mikado

Users that are interested in mikado are comparing it to the libraries listed below

• wurmlab / flo
  Same species annotation lift over pipeline.
  ☆98Updated 2 years ago
• bergmanlab / mcclintock
  Meta-pipeline to identify transposable element insertions using next generation sequencing data
  ☆103Updated 3 months ago
• tobiasrausch / wally
  Wally: Visualization of aligned sequencing reads and contigs
  ☆117Updated 5 months ago
• Dfam-consortium / TETools
  Dfam Transposable Element Tools Docker container.
  ☆100Updated this week
• lfaino / LoReAn
  Long Reads Annotation pipeline
  ☆72Updated 3 years ago
• informationsea / transanno
  accurate LiftOver tool for new genome assemblies
  ☆134Updated last year
• mroosmalen / nanosv
  SV caller for nanopore data
  ☆92Updated 5 years ago
• cpockrandt / genmap
  GenMap - Fast and Exact Computation of Genome Mappability
  ☆112Updated last year
• NAL-i5K / GFF3toolkit
  Python programs for processing GFF3 files
  ☆99Updated last year
• PacificBiosciences / barcoding
  Lima - Demultiplex Barcoded PacBio Samples
  ☆67Updated 4 months ago
• nanoporetech / pinfish
  Tools to annotate genomes using long read transcriptomics data
  ☆46Updated 4 years ago
• EVidenceModeler / EVidenceModeler
  source code for EVM
  ☆117Updated 9 months ago
• milkschen / leviosam2
  Fast and accurate coordinate conversion between assemblies
  ☆115Updated this week
• giesselmann / nanopype
  Snakemake pipelines for nanopore sequencing data archiving and processing
  ☆91Updated 3 years ago
• nanoporetech / pychopper
  A tool to identify, orient, trim and rescue full length cDNA reads
  ☆82Updated 3 years ago
• tao-bioinfo / gff3sort
  GFF3sort: A Perl Script to sort gff3 files and produce suitable results for tabix tools
  ☆51Updated 5 years ago
• fbreitwieser / bamcov
  Quickly calculate and visualize sequence coverage in alignment files
  ☆99Updated 6 years ago
• ksahlin / isONcorrect
  Error correction of ONT transcript reads
  ☆58Updated 2 years ago
• harvardinformatics / GenomeAnnotation
  Best practices and workflow for genome annotation
  ☆78Updated 5 months ago
• moiexpositoalonsolab / grenepipe
  A flexible, scalable, and reproducible pipeline to automate variant calling from raw sequence reads, with lots of bells and whistles - fo…
  ☆106Updated 2 months ago
• nhansen / SVanalyzer
  Tools for the analysis of structural variation in genomes
  ☆81Updated last year
• LooseLab / bulkvis
  ☆49Updated 10 months ago
• epi2me-labs / modbam2bed
  ☆49Updated last year
• wdecoster / nano-snakemake
  A snakemake pipeline for SV analysis from nanopore genome sequencing
  ☆51Updated 5 years ago
• colindaven / awesome-pangenomes
  A list of software for pangenomics
  ☆128Updated 2 weeks ago
• CshlSiepelLab / phast
  PHAST
  ☆75Updated this week
• kcleal / dysgu
  Toolkit for calling structural variants using short or long reads
  ☆109Updated last week
• ArimaGenomics / mapping_pipeline
  Mapping pipeline for data generated using Arima-HiC
  ☆80Updated last year
• Kuanhao-Chao / LiftOn
  🚀 LiftOn: Accurate annotation mapping for GFF/GTF across assemblies
  ☆108Updated 2 months ago
• gencorefacility / variant-calling-pipeline-gatk4
  Variant Calling Pipeline Using GATK4 and Nextflow
  ☆58Updated 2 years ago