EI-CoreBioinformatics / mikadoLinks
Mikado is a lightweight Python3 pipeline whose purpose is to facilitate the identification of expressed loci from RNA-Seq data * and to select the best models in each locus.
☆105Updated this week
Alternatives and similar repositories for mikado
Users that are interested in mikado are comparing it to the libraries listed below
Sorting:
- Same species annotation lift over pipeline.☆98Updated 2 years ago
- Plotting tools for nanopore methylation data☆94Updated 4 months ago
- Wally: Visualization of aligned sequencing reads and contigs☆120Updated 2 months ago
- Snakemake pipelines for nanopore sequencing data archiving and processing☆91Updated 3 years ago
- Meta-pipeline to identify transposable element insertions using next generation sequencing data☆105Updated 6 months ago
- A tool to identify, orient, trim and rescue full length cDNA reads☆83Updated 3 years ago
- Tools to annotate genomes using long read transcriptomics data☆45Updated 5 years ago
- Dfam Transposable Element Tools Docker container.☆101Updated last month
- Lima - Demultiplex Barcoded PacBio Samples☆67Updated 7 months ago
- GFF3sort: A Perl Script to sort gff3 files and produce suitable results for tabix tools☆51Updated 5 years ago
- GenMap - Fast and Exact Computation of Genome Mappability☆113Updated last year
- RNA modifications detection from Nanopore dRNA-Seq data☆87Updated 2 months ago
- Long Reads Annotation pipeline☆72Updated 3 years ago
- PHAST☆77Updated this week
- Error correction of ONT transcript reads☆58Updated 2 years ago
- Python programs for processing GFF3 files☆101Updated last year
- Toolkit for calling structural variants using short or long reads☆113Updated 2 months ago
- A snakemake pipeline for SV analysis from nanopore genome sequencing☆52Updated 5 years ago
- ☆52Updated 2 months ago
- LRSDAY: Long-read Sequencing Data Analysis for Yeasts☆33Updated last year
- Research release basecalling models and configurations☆117Updated 6 months ago
- Tools for working with second gen assemblies, fasta sequences, etc☆93Updated 9 years ago
- Variant Calling Pipeline Using GATK4 and Nextflow☆58Updated 2 years ago
- Variant calling tool for long-read sequencing data☆117Updated 8 months ago
- A list of software for pangenomics☆162Updated this week
- 🚀 LiftOn: Accurate annotation mapping for GFF/GTF across assemblies☆115Updated 2 weeks ago
- Long read aligner☆115Updated 2 years ago
- A simple toolset for BED files (warning: CLI may change before bedtk becomes stable)☆142Updated 3 months ago
- source code for EVM☆119Updated last year
- SV caller for nanopore data☆92Updated 5 years ago