EI-CoreBioinformatics / mikadoLinks
Mikado is a lightweight Python3 pipeline whose purpose is to facilitate the identification of expressed loci from RNA-Seq data * and to select the best models in each locus.
☆104Updated 8 months ago
Alternatives and similar repositories for mikado
Users that are interested in mikado are comparing it to the libraries listed below
Sorting:
- Same species annotation lift over pipeline.☆98Updated 2 years ago
- Long Reads Annotation pipeline☆72Updated 3 years ago
- Meta-pipeline to identify transposable element insertions using next generation sequencing data☆104Updated 4 months ago
- Wally: Visualization of aligned sequencing reads and contigs☆119Updated 2 weeks ago
- Tools to annotate genomes using long read transcriptomics data☆46Updated 4 years ago
- A tool to identify, orient, trim and rescue full length cDNA reads☆83Updated 3 years ago
- Lima - Demultiplex Barcoded PacBio Samples☆67Updated 5 months ago
- Tools for working with second gen assemblies, fasta sequences, etc☆93Updated 9 years ago
- GenMap - Fast and Exact Computation of Genome Mappability☆113Updated last year
- ☆50Updated last month
- Dfam Transposable Element Tools Docker container.☆100Updated last month
- 🚀 LiftOn: Accurate annotation mapping for GFF/GTF across assemblies☆113Updated 3 months ago
- Snakemake pipelines for nanopore sequencing data archiving and processing☆91Updated 3 years ago
- Simple code snippets and data for the One Flowcell - One Assembly study☆35Updated 7 years ago
- A snakemake pipeline for SV analysis from nanopore genome sequencing☆51Updated 5 years ago
- Tools for the analysis of structural variation in genomes☆81Updated last year
- Error correction of ONT transcript reads☆58Updated 2 years ago
- Dotplot large Genomes in an Interactive, Efficient and Simple way☆108Updated 3 weeks ago
- A set of workflows written in Nextflow for Genome Annotation.☆45Updated last year
- Structural variant caller for real-time long-read sequencing data☆57Updated 2 years ago
- LRSDAY: Long-read Sequencing Data Analysis for Yeasts☆32Updated last year
- Toolkit for calling structural variants using short or long reads☆109Updated last month
- GFF3sort: A Perl Script to sort gff3 files and produce suitable results for tabix tools☆51Updated 5 years ago
- SV caller for nanopore data☆92Updated 5 years ago
- Genome scaffolding based on HiC data in heterozygous and high ploidy genomes☆60Updated 9 months ago
- ☆49Updated 11 months ago
- Research release basecalling models and configurations☆115Updated 5 months ago
- RNA modifications detection from Nanopore dRNA-Seq data☆87Updated last month
- ☆71Updated 5 years ago
- Fast and accurate coordinate conversion between assemblies☆117Updated 2 weeks ago