EI-CoreBioinformatics / mikado
Mikado is a lightweight Python3 pipeline whose purpose is to facilitate the identification of expressed loci from RNA-Seq data * and to select the best models in each locus.
☆100Updated last month
Alternatives and similar repositories for mikado:
Users that are interested in mikado are comparing it to the libraries listed below
- Dfam Transposable Element Tools Docker container.☆88Updated 2 weeks ago
- Tools to annotate genomes using long read transcriptomics data☆45Updated 4 years ago
- Wally: Visualization of aligned sequencing reads and contigs☆113Updated 3 months ago
- Same species annotation lift over pipeline.☆96Updated last year
- Lima - Demultiplex Barcoded PacBio Samples☆65Updated last month
- Fast and accurate coordinate conversion between assemblies☆112Updated 6 months ago
- ☆47Updated 7 months ago
- Research release basecalling models and configurations☆107Updated 9 months ago
- A tool to identify, orient, trim and rescue full length cDNA reads☆81Updated 2 years ago
- Variant Calling Pipeline Using GATK4 and Nextflow☆54Updated 2 years ago
- ☆37Updated last week
- Tools for working with second gen assemblies, fasta sequences, etc☆93Updated 8 years ago
- Snakemake pipelines for nanopore sequencing data archiving and processing☆89Updated 3 years ago
- Meta-pipeline to identify transposable element insertions using next generation sequencing data☆96Updated last year
- ☆47Updated 4 months ago
- Comprehensive TE insertion identification with WGS/WES data from multiple sequencing technics☆107Updated last month
- Error correction of ONT transcript reads☆59Updated last year
- Long Reads Annotation pipeline☆71Updated 2 years ago
- Pangenome-based genome inference☆127Updated 2 weeks ago
- PHAST☆72Updated this week
- Correct mismatches, microindels, and noncanonical splice junctions in long reads that have been mapped to the genome☆69Updated last year
- accurate LiftOver tool for new genome assemblies☆124Updated 7 months ago
- ☆76Updated 4 years ago
- SV caller for nanopore data☆91Updated 4 years ago
- A list of software for pangenomics☆107Updated 3 weeks ago
- source code for EVM☆109Updated 3 months ago
- Best practices and workflow for genome annotation☆74Updated last month
- Python programs for processing GFF3 files☆96Updated last year
- Methylation Phasing for Nanopore Sequencing☆47Updated 2 years ago
- Software for clustering de novo assembled transcripts and counting overlapping reads☆71Updated 3 years ago