EI-CoreBioinformatics / mikado
Mikado is a lightweight Python3 pipeline whose purpose is to facilitate the identification of expressed loci from RNA-Seq data * and to select the best models in each locus.
☆98Updated last month
Related projects ⓘ
Alternatives and complementary repositories for mikado
- Dfam Transposable Element Tools Docker container.☆85Updated last month
- Wally: Visualization of aligned sequencing reads and contigs☆108Updated 2 months ago
- Tools to annotate genomes using long read transcriptomics data☆45Updated 3 years ago
- Same species annotation lift over pipeline.☆96Updated last year
- Snakemake pipelines for nanopore sequencing data archiving and processing☆88Updated 2 years ago
- Meta-pipeline to identify transposable element insertions using next generation sequencing data☆93Updated 10 months ago
- Lima - Demultiplex Barcoded PacBio Samples☆65Updated 3 weeks ago
- Error correction of ONT transcript reads☆58Updated last year
- A tool to identify, orient, trim and rescue full length cDNA reads☆81Updated 2 years ago
- SV caller for nanopore data☆91Updated 4 years ago
- accurate LiftOver tool for new genome assemblies☆111Updated 3 months ago
- Tandem repeat genotyping and visualization from PacBio HiFi data☆106Updated this week
- Tools for the analysis of structural variation in genomes☆77Updated 7 months ago
- Variant calling tool for long-read sequencing data☆101Updated last week
- Fast and accurate coordinate conversion between assemblies☆110Updated 2 months ago
- PGR-TK: Pangenome Research Tool Kit☆94Updated 7 months ago
- ☆48Updated 3 months ago
- Variant Calling Pipeline Using GATK4 and Nextflow☆53Updated last year
- source code for EVM☆103Updated 10 months ago
- Simple pileup-based variant caller☆83Updated 7 months ago
- GFF3sort: A Perl Script to sort gff3 files and produce suitable results for tabix tools☆47Updated 4 years ago
- A simple toolset for BED files (warning: CLI may change before bedtk becomes stable)☆137Updated 5 months ago
- ☆76Updated last week
- Correct mismatches, microindels, and noncanonical splice junctions in long reads that have been mapped to the genome☆67Updated 9 months ago
- Comprehensive TE insertion identification with WGS/WES data from multiple sequencing technics☆102Updated 4 months ago
- Constructing a pangenome gene graph☆174Updated 4 months ago
- Phased assembly variant caller☆98Updated last month
- Quickly calculate and visualize sequence coverage in alignment files☆99Updated 5 years ago