EI-CoreBioinformatics / mikado
Mikado is a lightweight Python3 pipeline whose purpose is to facilitate the identification of expressed loci from RNA-Seq data * and to select the best models in each locus.
☆101Updated 3 months ago
Alternatives and similar repositories for mikado
Users that are interested in mikado are comparing it to the libraries listed below
Sorting:
- Same species annotation lift over pipeline.☆97Updated last year
- Wally: Visualization of aligned sequencing reads and contigs☆115Updated last month
- Julia package powering VIVA, our tool for visualization of genomic variation data. Manual:☆86Updated last year
- Dfam Transposable Element Tools Docker container.☆91Updated last week
- Tools to annotate genomes using long read transcriptomics data☆45Updated 4 years ago
- ☆46Updated 8 months ago
- Meta-pipeline to identify transposable element insertions using next generation sequencing data☆99Updated last year
- Long Reads Annotation pipeline☆72Updated 3 years ago
- Fast and accurate coordinate conversion between assemblies☆112Updated last month
- Snakemake pipelines for nanopore sequencing data archiving and processing☆90Updated 3 years ago
- Variant Calling Pipeline Using GATK4 and Nextflow☆54Updated 2 years ago
- Tip and tricks for BAM files☆85Updated 6 years ago
- Research release basecalling models and configurations☆110Updated 10 months ago
- A tool to identify, orient, trim and rescue full length cDNA reads☆81Updated 2 years ago
- A list of software for pangenomics☆112Updated this week
- Simple pileup-based variant caller☆89Updated 3 weeks ago
- Error correction of ONT transcript reads☆58Updated last year
- Tools for plotting methylation data in various ways☆147Updated this week
- 🚀 LiftOn: Accurate annotation mapping for GFF/GTF across assemblies☆94Updated 2 months ago
- Snakemake-based workflow for detecting structural variants in genomic data☆80Updated 3 months ago
- Lima - Demultiplex Barcoded PacBio Samples☆66Updated last week
- ☆39Updated this week
- Correct mismatches, microindels, and noncanonical splice junctions in long reads that have been mapped to the genome☆69Updated last year
- Somatic structural variant caller for long-read data☆63Updated 3 weeks ago
- Tools for working with second gen assemblies, fasta sequences, etc☆93Updated 8 years ago
- BAM Statistics, Feature Counting and Annotation☆149Updated 3 months ago
- PHAST☆73Updated this week
- Collection of tools for the analysis of CpG data☆81Updated 3 months ago
- Toolkit for calling structural variants using short or long reads☆102Updated this week
- Software for clustering de novo assembled transcripts and counting overlapping reads☆71Updated 3 years ago