lauguma / GWideCodeMLLinks
A Python package for testing evolutionary hypotheses in genome-wide approaches.
☆31Updated 4 years ago
Alternatives and similar repositories for GWideCodeML
Users that are interested in GWideCodeML are comparing it to the libraries listed below
Sorting:
- Convergent substitution detection tool based on the PCOC model☆31Updated 3 years ago
- BITACORA: A Bioinformatics tool for gene family annotation☆49Updated 5 months ago
- MCMCtreeR: A package to estimate distribution values for temporal node constraints and prepare input files for MCMCtree☆45Updated 5 years ago
- A shiny application to visualize MCscan result☆37Updated 3 years ago
- An R package to identify and classify duplicated genes from whole-genome protein sequence data☆28Updated 2 months ago
- Computational Analysis of Gene Expression Evolution☆43Updated 2 months ago
- We developed GenomeSyn as a new tool for constructing and visualizing genome synteny, its novel design and implementation can serve as a …☆30Updated 3 years ago
- MCMCtree tutorials☆26Updated last year
- PlantTribes is a collection of automated gene family analysis pipelines for comparative plant genomics☆38Updated 2 years ago
- An R package to infer and analyze synteny networks from protein sequences☆34Updated 3 months ago
- Genome Annotation Pipeline☆39Updated last year
- A genome annotation pipeline that use short and long sequencing reads alignments from animal genomes☆30Updated last year
- read and analyse RepeatMasker output☆27Updated 2 years ago
- ☆45Updated 3 years ago
- Multi-genome synteny block visualization tool☆47Updated last month
- Plant genome assembly and annotation pipeline using snakemake☆48Updated 6 months ago
- A high performance tool to identify orthologs and paralogs across genomes.☆27Updated 2 years ago
- EnTAP is moving to GitLab for future changes https://gitlab.com/PlantGenomicsLab/EnTAP☆41Updated 9 months ago
- A comparative genomics workflow using Nextflow, conda, Julia and R☆48Updated last year
- Resistify is a program which rapidly identifies and classifies plant resistance genes from protein sequences. It is designed to be lightw…☆40Updated last week
- ☆33Updated 4 years ago
- ☆33Updated last year
- CAAStools is a bioinformatics toolbox that allows the user to identify and validate CAAS on MSA of orthologous proteins.☆21Updated last year
- paml documentation and tutorials☆63Updated 6 months ago
- scripts for the project of seven thaliana genomes assembly☆42Updated 4 years ago
- Yet another Hi-C scaffolding tool☆22Updated last year
- scripts to parse and analyse MCScanX collinearity output☆32Updated 5 years ago
- STAG: Species Tree from All Genes☆34Updated 6 years ago
- perSVade: personalized Structural Variation detection☆40Updated 2 months ago
- A Nextflow pipeline for evaluating assembly quality☆38Updated last week