lauguma / GWideCodeMLLinks
A Python package for testing evolutionary hypotheses in genome-wide approaches.
☆31Updated 4 years ago
Alternatives and similar repositories for GWideCodeML
Users that are interested in GWideCodeML are comparing it to the libraries listed below
Sorting:
- An R package to identify and classify duplicated genes from whole-genome protein sequence data☆26Updated 2 months ago
- An R package to infer and analyze synteny networks from protein sequences☆30Updated 5 months ago
- Yet another Hi-C scaffolding tool☆19Updated 7 months ago
- BITACORA: A Bioinformatics tool for gene family annotation☆45Updated this week
- Multi-genome synteny block visualization tool☆38Updated 4 months ago
- A shiny application to visualize MCscan result☆36Updated 2 years ago
- We developed GenomeSyn as a new tool for constructing and visualizing genome synteny, its novel design and implementation can serve as a …☆27Updated 3 years ago
- Scripts to convert between file formats for various analyses☆16Updated 3 weeks ago
- Dinoflagellate Annotation Workflow☆14Updated 2 years ago
- read and analyse RepeatMasker output☆24Updated 2 years ago
- Computational Analysis of Gene Expression Evolution☆41Updated last week
- methods for orphan gene prediction paper optimization☆25Updated 3 years ago
- ☆26Updated 4 years ago
- A high performance tool to identify orthologs and paralogs across genomes.☆26Updated 2 years ago
- ☆27Updated 2 years ago
- Convergent substitution detection tool based on the PCOC model☆31Updated 3 years ago
- ☆21Updated 5 years ago
- A genome annotation pipeline that use short and long sequencing reads alignments from animal genomes☆29Updated last year
- MCMCtree tutorials☆24Updated last year
- Codes for the lettuce resequencing project in 2020☆30Updated 3 years ago
- Genome Annotation Pipeline☆35Updated 9 months ago
- ☆32Updated 4 years ago
- SyntenyFinder contains a collection of scripts for performing and visualizing macrosynteny analyses. It supports annotated chromosome-lev…☆30Updated 4 months ago
- PlantTribes is a collection of automated gene family analysis pipelines for comparative plant genomics☆35Updated 2 years ago
- MCMCtreeR: A package to estimate distribution values for temporal node constraints and prepare input files for MCMCtree☆45Updated 5 years ago
- a tree splitting and pruning algorithm for retrieving single-copy orthologs from gene family trees☆26Updated 3 months ago
- A quick user guide for de novo transposable element (TE) library generation and TE screening. Utilising; the Extensive de novo TE Annotat…☆27Updated 2 years ago
- R package to draw syntenic plots in 3 different styles☆40Updated last year
- EndHic is a fast and easy-to-use Hi-C scaffolding tool, using the Hi-C links from contig end regions instead of whole contig regions to a…☆23Updated 2 years ago
- ☆20Updated 9 months ago