lauguma / GWideCodeMLLinks
A Python package for testing evolutionary hypotheses in genome-wide approaches.
☆31Updated 4 years ago
Alternatives and similar repositories for GWideCodeML
Users that are interested in GWideCodeML are comparing it to the libraries listed below
Sorting:
- Convergent substitution detection tool based on the PCOC model☆31Updated 3 years ago
- MCMCtreeR: A package to estimate distribution values for temporal node constraints and prepare input files for MCMCtree☆45Updated 5 years ago
- Computational Analysis of Gene Expression Evolution☆43Updated 2 months ago
- A shiny application to visualize MCscan result☆37Updated 3 years ago
- Multi-genome synteny block visualization tool☆47Updated last week
- BITACORA: A Bioinformatics tool for gene family annotation☆49Updated 4 months ago
- STAG: Species Tree from All Genes☆34Updated 6 years ago
- Plant genome assembly and annotation pipeline using snakemake☆48Updated 5 months ago
- ☆33Updated 4 years ago
- We developed GenomeSyn as a new tool for constructing and visualizing genome synteny, its novel design and implementation can serve as a …☆30Updated 3 years ago
- ☆45Updated 3 years ago
- Easily construct the ML species tree with single-copy gene shared by different species.☆27Updated 7 years ago
- An R package to identify and classify duplicated genes from whole-genome protein sequence data☆28Updated last month
- ☆29Updated last year
- Chromosome-level synteny plotting using orthologous regions☆30Updated last year
- TransposonPSI involves a PSI-blast search of a protein or nucleotide sequence against a set of profiles of proteins corresponding to majo…☆14Updated 5 years ago
- A genome annotation pipeline that use short and long sequencing reads alignments from animal genomes☆30Updated last year
- PlantTribes is a collection of automated gene family analysis pipelines for comparative plant genomics☆38Updated 2 years ago
- MCMCtree tutorials☆24Updated last year
- Genome Annotation Pipeline☆39Updated last year
- An R package to infer and analyze synteny networks from protein sequences☆33Updated 3 months ago
- methods for orphan gene prediction paper optimization☆25Updated 3 years ago
- A comparative genomics workflow using Nextflow, conda, Julia and R☆45Updated last year
- wgd v2: a suite of tools to uncover and date ancient polyploidy and whole-genome duplication☆37Updated 8 months ago
- Resistify is a program which rapidly identifies and classifies plant resistance genes from protein sequences. It is designed to be lightw…☆40Updated last week
- EnTAP is moving to GitLab for future changes https://gitlab.com/PlantGenomicsLab/EnTAP☆41Updated 9 months ago
- HyPhy standalone analyses☆47Updated 2 months ago
- Yet another Hi-C scaffolding tool☆22Updated last year
- Pan-genome Construction and Population Structure Variation Calling pipeline☆44Updated last year
- R package to draw syntenic plots in 3 different styles☆42Updated 2 months ago