Alternatives and similar repositories for Scripts_for_GB

Users that are interested in Scripts_for_GB are comparing it to the libraries listed below

• chenym1 / genetribe
  A tool for performing collinearity-incorporating homology inference
  ☆32Updated last year
• dongwei1220 / EasySpeciesTree
  Easily construct the ML species tree with single-copy gene shared by different species.
  ☆27Updated 6 years ago
• schneebergerlab / AMPRIL-genomes
  scripts for the project of seven thaliana genomes assembly
  ☆40Updated 4 years ago
• Sunhh / NGS_data_processing
  Tool set for processing fasta/fastq/table formated data. Usually they are perl scripts.
  ☆55Updated last month
• baozg / assembly-annotation-pipeline
  Plant genome assembly and annotation pipeline using snakemake
  ☆44Updated 2 months ago
• LQHHHHH / paml-yn00-run-pipeline
  A personal pipeline to calculate Ka,Ks and Ka/Ks using PAML-yn00 with YN method
  ☆9Updated 4 months ago
• sjteresi / TE_Density
  Python script calculating transposable element density for all genes in a genome. Publication: https://mobilednajournal.biomedcentral.com…
  ☆33Updated 9 months ago
• molevol-ub / bitacora
  BITACORA: A Bioinformatics tool for gene family annotation
  ☆46Updated last month
• xiekunwhy / bsa
  Bulked-Segregant Analysis using vcf file with or without parents
  ☆28Updated 6 months ago
• wjian8 / psvcp_v1.01
  Pan-genome Construction and Population Structure Variation Calling pipeline
  ☆41Updated 10 months ago
• Immortal2333 / Telomeres_and_Centromeres
  This is a method to find telomeres and centromeres in plants.
  ☆41Updated 2 years ago
• LAILAB-CAU / update-Mo17
  ☆25Updated 2 years ago
• Chenglin20170390 / Haplotype-diversity
  This repository contains relevant code and explanation for ”Leveraging a phased pangenome to design ideal haplotypes for hybrid potato br…
  ☆30Updated 5 months ago
• thamala / PBScan
  Selection outlier scan with population branch statistic
  ☆13Updated last year
• pinbo / SNP_Primer_Pipeline
  ☆21Updated 2 years ago
• Zhanmengtao / bin
  scripts
  ☆17Updated 6 years ago
• hillerlab / GeneLossPipe
  ☆24Updated 2 years ago
• jkimlab / DESCHRAMBLER
  ☆24Updated last year
• obenno / ShinySyn
  A shiny application to visualize MCscan result
  ☆37Updated 2 years ago
• xukaili / CandiHap
  A haplotype analysis toolkit for natural variation study.
  ☆30Updated last year
• lurebgi / chicken-T2T
  Scripts that used in our chicken T2T manuscript.
  ☆20Updated 2 years ago
• lardo / khaper
  ☆28Updated 3 years ago
• vgteam / giraffe-sv-paper
  ☆42Updated last year
• Nextomics / pipeline-for-isoseq
  A pipeline for isoseq
  ☆23Updated 7 years ago
• Jianwei-Zhang / DEGAP
  Dynamic Elongation of a Genome Assembly Path
  ☆21Updated last year
• JiangYuLab / CNVcaller
  ☆43Updated last year
• simon19891216 / CentIER
  ☆34Updated 10 months ago
• Yandell-Lab / maker
  Genome Annotation Pipeline
  ☆36Updated 10 months ago
• Farre-lab / syntenyPlotteR
  R package to draw syntenic plots in 3 different styles
  ☆41Updated last year
• eswlab / orphan-prediction
  methods for orphan gene prediction paper optimization
  ☆25Updated 3 years ago