The code used in the manuscript titled "Gene duplication and evolution in recurring polyploidization-diploidization cycles in plants".
☆29Mar 19, 2021Updated 5 years ago
Alternatives and similar repositories for Scripts_for_GB
Users that are interested in Scripts_for_GB are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A pipeline used to identify different modes of duplicated gene pairs☆123Jul 22, 2025Updated last year
- A personal pipeline to calculate Ka,Ks and Ka/Ks using PAML-yn00 with YN method☆10Feb 26, 2025Updated last year
- Phylogenetic iDentification of Subgenomes☆10Jul 7, 2022Updated 4 years ago
- ☆77Apr 23, 2020Updated 6 years ago
- CLfinder-OrthNet, a pipeline to encode orthologs from multiple genomes and their evolutionary history into networks (OrthNets) based on c…☆10Jun 9, 2022Updated 4 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- HomBlocks: A multiple-alignment construction pipeline for organelle phylogenomics based on locally collinear block searching☆36Aug 7, 2017Updated 9 years ago
- PlantTribes is a collection of automated gene family analysis pipelines for comparative plant genomics☆38Apr 28, 2023Updated 3 years ago
- Bulked-Segregant Analysis using vcf file with or without parents☆34Apr 1, 2026Updated 5 months ago
- ☆12Apr 10, 2021Updated 5 years ago
- Tool set for processing fasta/fastq/table formated data. Usually they are perl scripts.☆56Aug 21, 2026Updated last week
- scripts and intermediate files used to annotate TEs in Jiao et al.☆34Apr 12, 2018Updated 8 years ago
- A stand-alone application for constructing websites for visualizing and browsing synteny blocks☆18May 30, 2026Updated 3 months ago
- A Plant Presence/absence Variants Scanner and Pan-genome Construction Pipeline☆27May 24, 2021Updated 5 years ago
- A tool for performing collinearity-incorporating homology inference☆33Jul 17, 2026Updated last month
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Workflow for Building Microsynteny Networks☆62Jul 30, 2022Updated 4 years ago
- MODAS: Multi-Omics Data Association Study toolkit☆21Nov 21, 2024Updated last year
- ☆16Mar 20, 2023Updated 3 years ago
- SINE annotation tool for plant genomes☆19Jan 21, 2024Updated 2 years ago
- Identification of conserved non-coding sequences in plants☆51Jun 9, 2026Updated 2 months ago
- Pipeline for generate Ks plots of transcriptome data.☆12Dec 27, 2017Updated 8 years ago
- This python script can be used to detect Whole-genome duplication (WGD) with the dS based method.☆26Feb 22, 2019Updated 7 years ago
- ☆12Nov 23, 2020Updated 5 years ago
- Full GATK SNP calling pipeline☆24Oct 30, 2025Updated 10 months ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Algorithm For Gene Order Reconstruction in Ancestors☆86Jul 8, 2026Updated last month
- defusion☆14Aug 24, 2021Updated 5 years ago
- Genome scaffolding based on HiC data in heterozygous and high ploidy genomes☆60Jan 3, 2025Updated last year
- Scripts to do haplotype analysis on pan genomes.☆20Sep 24, 2020Updated 5 years ago
- ☆16Mar 8, 2024Updated 2 years ago
- A shiny application to visualize MCscan result☆37Jun 26, 2026Updated 2 months ago
- A tool to infer species tree and phylogenetic network from multilocus data☆32Jul 2, 2020Updated 6 years ago
- Predict genic elements as splice sites, exons or genes, along eukaryotic DNA sequences☆18Jul 18, 2026Updated last month
- Perform GWAS with gemma in a simple pipeline☆27Apr 26, 2025Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- This is code for running Orthofinder -> PAML☆13Jul 27, 2016Updated 10 years ago
- plot genome alignment synteny☆21May 25, 2020Updated 6 years ago
- ☆17Jul 29, 2023Updated 3 years ago
- ☆42Jun 8, 2023Updated 3 years ago
- ☆15May 31, 2020Updated 6 years ago
- hot_scan is a free software to detect genomic regions unusually rich (hotspot) in a given pattern via scan statistics☆10Oct 17, 2013Updated 12 years ago
- Easily construct the ML species tree with single-copy gene shared by different species.☆27Oct 26, 2018Updated 7 years ago