Synteny matrix representation with maximum likelihood pipeline
☆17Jul 7, 2021Updated 5 years ago
Alternatives and similar repositories for Syn-MRL
Users that are interested in Syn-MRL are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Workflow for Building Microsynteny Networks☆64Jul 30, 2022Updated 4 years ago
- Decomposition Into Single-COpy gene trees (DISCO) is a method for decomposing multi-copy gene-family trees while attempting to preserve o…☆13Updated this week
- Bayesian gene tree reconciliation and WGD inference using amalgamated likelihood estimation☆16Apr 29, 2025Updated last year
- Nucmer from Mummer3 followed by ggplot for nicer and more customisable genome alignment plots.☆12Feb 25, 2021Updated 5 years ago
- A hybrid summary method for reconstructing species tree from gene trees☆10Jan 6, 2021Updated 5 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- ☆13Dec 22, 2025Updated 10 months ago
- Fast, accurate species tree estimation.☆13Aug 17, 2026Updated 2 months ago
- Ancestral flowering plant genomes reconstruction☆14Jan 23, 2023Updated 3 years ago
- ASTRAL for PaRalogs and Orthologs☆24Sep 13, 2022Updated 4 years ago
- An R package to infer and analyze synteny networks from protein sequences☆44Jul 23, 2025Updated last year
- GenomeThreader gene prediction software.☆14Nov 10, 2025Updated 11 months ago
- Strand and WGD aware syntenic gene identification☆16Oct 16, 2025Updated last year
- Angiosperm karyotype evolution☆11May 30, 2026Updated 5 months ago
- PhaseGrass, a reference-based phasing workflow generating chromosome-level haplotype-resolved diploid assembly for highly heterozygous ge…☆18Jun 2, 2026Updated 5 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- ☆11Mar 14, 2026Updated 7 months ago
- The GitHub repository for the A. thaliana pan-NLR'ome project.☆18Jun 6, 2019Updated 7 years ago
- My published program for estimating the population recombination rate.☆11Apr 21, 2017Updated 9 years ago
- VolcanoSV enables accurate and robust structural variant calling in diploid genomes from single-molecule long read sequencing☆10Sep 8, 2026Updated last month
- Create a pseudohaploid assembly from a partially resolved diploid assembly☆32Nov 22, 2019Updated 6 years ago
- A program to generate a graph which presents a simplified representation of several full length genomes☆13Aug 23, 2018Updated 8 years ago
- Scripts and datasets for the analysis on convergent genome evolution of animal terrestrialisation☆16Sep 27, 2025Updated last year
- DFOIL: Introgression Testing for Five Taxa☆33May 15, 2021Updated 5 years ago
- Bash scripts and data used in pantranscriptomic paper☆25Oct 21, 2022Updated 4 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- ☆10Mar 5, 2019Updated 7 years ago
- R package to calculate the similarity of two trees based on the number of shared four-taxon subtrees (or splits)☆18Oct 5, 2026Updated last month
- ☆36Jun 15, 2023Updated 3 years ago
- A toolkit for identifying recombination and recombinant genotypes☆26Dec 3, 2025Updated 11 months ago
- ☆11Feb 16, 2021Updated 5 years ago
- A Python API and a command-line tool for the Tree of Life☆19Aug 28, 2020Updated 6 years ago
- ☆15May 28, 2025Updated last year
- SCORPiOs is a synteny-guided gene tree correction pipeline for clades that have undergone a whole-genome duplication event.☆24Sep 23, 2024Updated 2 years ago
- scripts for the project of seven thaliana genomes assembly☆42May 22, 2021Updated 5 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Bash scripts for analysis of Hyb-Seq data (from raw reads to species trees/networks)☆20Sep 27, 2026Updated last month
- STAG: Species Tree from All Genes☆37Dec 10, 2018Updated 7 years ago
- FINSURF is a tool designed to analyse lists of sequences variants in the human genome.☆12Oct 24, 2022Updated 4 years ago
- ☆28Dec 15, 2025Updated 10 months ago
- MITE Tracker: An accurate approach to identify miniature inverted-repeat transposable elements in large genomes☆20Mar 21, 2024Updated 2 years ago
- ☆17Jun 21, 2022Updated 4 years ago
- new repo☆28May 18, 2021Updated 5 years ago