Alternatives and similar repositories for PhylDiag:

Users that are interested in PhylDiag are comparing it to the libraries listed below

• VIB-PSB / ksrates
  ksrates is a tool to position whole-genome duplications relative to speciation events using substitution-rate-adjusted mixed paralog-orth…
  ☆17Updated 8 months ago
• wtsi-hpag / scanPAV
  Pipeline to detect PAVs (presence/absence variations) in genome comparison using whole genome alignment.
  ☆29Updated 6 years ago
• esolares / HapSolo
  Reduction of Althaps and Duplicate Contigs for Improved Hi-C Scaffolding
  ☆19Updated 6 months ago
• JLSteenwyk / orthosnap
  a tree splitting and pruning algorithm for retrieving single-copy orthologs from gene family trees
  ☆25Updated 2 weeks ago
• jydu / maffilter
  The MafFilter genome alignment processor
  ☆17Updated 5 months ago
• nlapalu / SDDetector
  Segmental duplication detection tool
  ☆13Updated 2 years ago
• dfguan / pin_hic
  A Hi-C scaffolding method
  ☆22Updated 3 years ago
• simonhmartin / asynt
  Genome alignment and synteny plots
  ☆28Updated last year
• GLBRC / sppIDer
  a tool to identify species and inter-species hybrids and chromosome copy number variants from short-read data
  ☆17Updated 5 years ago
• wushyer / RGAAT_v2
  Add multiple thread function for genome comparison
  ☆15Updated 3 years ago
• yangli557 / AnnoSINE
  SINE annotation tool for plant genomes
  ☆17Updated last year
• jradrion / TEFLoN
  TEFLoN uses paired-end illumina sequence data to discover and genotype transposable elements present in your samples.
  ☆13Updated 3 years ago
• AntoineHo / HapPy
  Haploidy and Size Completeness Estimation
  ☆13Updated 10 months ago
• kavonrtep / dante
  Domain based annotation of transposable elements
  ☆19Updated last month
• 4ureliek / TEorthology
  Script to help assessing the evolutionary history of a TE family
  ☆15Updated 5 years ago
• caballero / RepeatLandscape
  profile the repeat landscape in a genome
  ☆15Updated 10 years ago
• Kirovez / pyTanFinder
  Python scripts to run tandem repeat finder program (Benson, 1999) and parse the results
  ☆12Updated 5 years ago
• c-zhou / polyGembler
  ☆16Updated 2 years ago
• Rinoahu / SwiftOrtho
  A high performance tool to identify orthologs and paralogs across genomes.
  ☆26Updated last year
• BioinformaticsToolsmith / Red
  Red: an intelligent, rapid, accurate tool for detecting repeats de-novo on the genomic scale.
  ☆15Updated 10 months ago
• atifrahman / SWALO
  Scaffolding with assembly likelihood optimization
  ☆20Updated 4 years ago
• bpucker / MYB_annotator
  This tool performs an automatic identification, annotation, and analysis of the MYB gene family in plants. It can be applied to new trans…
  ☆17Updated 7 months ago
• legumeinfo / pandagma
  Generate pan-gene sets, given a collection of genome assemblies and corresponding gene models.
  ☆17Updated last week
• jmsong2 / GenomeSyn
  We developed GenomeSyn as a new tool for constructing and visualizing genome synteny, its novel design and implementation can serve as a …
  ☆25Updated 3 years ago
• Zhuxitong / ppsPCP
  A Plant Presence/absence Variants Scanner and Pan-genome Construction Pipeline
  ☆26Updated 3 years ago
• sanger-tol / yahs
  Yet another Hi-C scaffolding tool
  ☆19Updated 4 months ago
• Uauy-Lab / pangenome-haplotypes
  Scripts to do haplotype analysis on pan genomes.
  ☆21Updated 4 years ago
• NBISweden / TransposonPSI
  TransposonPSI involves a PSI-blast search of a protein or nucleotide sequence against a set of profiles of proteins corresponding to majo…
  ☆13Updated 4 years ago
• WeijiaSu / TIR-Learner-Rice
  Modified TIR-Learner for Rice genome
  ☆12Updated 5 years ago