DyogenIBENS / PhylDiag
From the comparison of two extant genomes and corresponding gene families, PhylDiag detects conserved segments, i.e. segments of chromosomes unbroken during evolution.
☆15Updated last year
Related projects ⓘ
Alternatives and complementary repositories for PhylDiag
- The MafFilter genome alignment processor☆17Updated 2 months ago
- Bayesian gene tree reconciliation and WGD inference using amalgamated likelihood estimation☆12Updated 2 years ago
- Pipeline to detect PAVs (presence/absence variations) in genome comparison using whole genome alignment.☆29Updated 6 years ago
- a tool to identify species and inter-species hybrids and chromosome copy number variants from short-read data☆17Updated 5 years ago
- ksrates is a tool to position whole-genome duplications relative to speciation events using substitution-rate-adjusted mixed paralog-orth…☆15Updated 4 months ago
- Simple pipeline to go from an alignment to a neutral model, using the PHAST toolkit☆11Updated 4 years ago
- Convergent substitution detection tool based on the PCOC model☆29Updated 2 years ago
- A Plant Presence/absence Variants Scanner and Pan-genome Construction Pipeline☆26Updated 3 years ago
- Script to help assessing the evolutionary history of a TE family☆14Updated 5 years ago
- Red: an intelligent, rapid, accurate tool for detecting repeats de-novo on the genomic scale.☆15Updated 6 months ago
- Tools for haplotype-wise reconstruction of pseudomolecules☆20Updated last month
- Perl script for manipulating multiple sequence alignments for phylogenetic reconstruction☆10Updated 10 years ago
- ☆12Updated 3 years ago
- This tool performs an automatic identification, annotation, and analysis of the MYB gene family in plants. It can be applied to new trans…☆17Updated 4 months ago
- TEFLoN uses paired-end illumina sequence data to discover and genotype transposable elements present in your samples.☆13Updated 3 years ago
- scripts to parse and analyse MCScanX collinearity output☆29Updated 4 years ago
- Tree House Explorer (THEx) is a novel genome browser for exploring phylogenetic and genomic data in one succinct place.☆12Updated 9 months ago
- A Hi-C scaffolding method☆22Updated 2 years ago
- Domain based annotation of transposable elements☆19Updated last month
- ASTRAL for PaRalogs and Orthologs☆19Updated 2 years ago
- a tree splitting and pruning algorithm for retrieving single-copy orthologs from gene family trees☆24Updated 5 months ago
- CAMSA: a tool for Comparative Analysis and Merging of Scaffold Assemblies☆24Updated 4 years ago
- ☆14Updated 4 years ago
- Reduction of Althaps and Duplicate Contigs for Improved Hi-C Scaffolding☆19Updated 3 months ago
- PREQUAL: a pre-alignment quality filter for comparative sequence analyses☆30Updated 2 years ago
- Genome-wide scan for balancing selection using beta statistic☆27Updated last year
- Genome assembly soft-masking using Red (REpeat Detector)☆12Updated 5 years ago
- Genome alignment and synteny plots☆27Updated last year
- wgd v2: a suite of tools to uncover and date ancient polyploidy and whole-genome duplication☆25Updated 3 weeks ago
- We developed GenomeSyn as a new tool for constructing and visualizing genome synteny, its novel design and implementation can serve as a …☆23Updated 2 years ago