From the comparison of two extant genomes and corresponding gene families, PhylDiag detects conserved segments, i.e. segments of chromosomes unbroken during evolution.
☆15Aug 7, 2023Updated 3 years ago
Alternatives and similar repositories for PhylDiag
Users that are interested in PhylDiag are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- SCORPiOs is a synteny-guided gene tree correction pipeline for clades that have undergone a whole-genome duplication event.☆24Sep 23, 2024Updated 2 years ago
- Segmental duplication detection tool☆15Feb 7, 2023Updated 3 years ago
- Algorithm For Gene Order Reconstruction in Ancestors☆86Jul 8, 2026Updated 3 months ago
- FINSURF is a tool designed to analyse lists of sequences variants in the human genome.☆12Oct 24, 2022Updated 3 years ago
- PREQUAL: a pre-alignment quality filter for comparative sequence analyses☆34Jun 1, 2022Updated 4 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- R package to draw syntenic plots in 3 different styles☆47Feb 2, 2026Updated 8 months ago
- Tool set for processing fasta/fastq/table formated data. Usually they are perl scripts.☆56Oct 9, 2026Updated last week
- Instruction and scripts for reconstructing ancestral genome from pairwise syntenic blocks using MLGO☆13Oct 30, 2018Updated 7 years ago
- Tools for improving the sensitivity and specificity of genome alignments☆58Mar 12, 2026Updated 7 months ago
- SYNPHONI is a tool designed for reconstructing the dynamic evolution of syntenic relationships across all scales of phylogenetic distance…☆12May 7, 2023Updated 3 years ago
- A genome-scale, fast, and precise segmental duplications mapping tool☆36Sep 11, 2024Updated 2 years ago
- Annotate Olfactory receptor CDS from genome☆11Apr 29, 2023Updated 3 years ago
- ☆25Nov 29, 2022Updated 3 years ago
- CAAStools is a bioinformatics toolbox that allows the user to identify and validate CAAS on MSA of orthologous proteins.☆26Nov 21, 2023Updated 2 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Gene Family Annotation Workflow☆12Mar 26, 2024Updated 2 years ago
- CLfinder-OrthNet, a pipeline to encode orthologs from multiple genomes and their evolutionary history into networks (OrthNets) based on c…☆10Jun 9, 2022Updated 4 years ago
- BITACORA: A Bioinformatics tool for gene family annotation☆58Dec 10, 2025Updated 10 months ago
- issues for semina "Data Visulization"☆13Dec 23, 2025Updated 9 months ago
- ☆13Nov 15, 2017Updated 8 years ago
- Phylogenetic iDentification of Subgenomes☆10Jul 7, 2022Updated 4 years ago
- Code for TAD_SV project☆11Mar 16, 2022Updated 4 years ago
- Estimating gene family turnover rates by likelihood-based methods☆12Aug 17, 2020Updated 6 years ago
- ☆77Apr 23, 2020Updated 6 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- This python script can be used to detect Whole-genome duplication (WGD) with the dS based method.☆26Feb 22, 2019Updated 7 years ago
- Bayesian gene tree reconciliation and WGD inference using amalgamated likelihood estimation☆16Apr 29, 2025Updated last year
- Decomposition Into Single-COpy gene trees (DISCO) is a method for decomposing multi-copy gene-family trees while attempting to preserve o…☆13Jun 19, 2025Updated last year
- ☆28Aug 14, 2026Updated 2 months ago
- Some useful gadgets☆12Mar 14, 2022Updated 4 years ago
- ☆21Jul 30, 2026Updated 2 months ago
- ☆34Aug 1, 2023Updated 3 years ago
- Pipeline to detect PAVs (presence/absence variations) in genome comparison using whole genome alignment.☆31Mar 5, 2018Updated 8 years ago
- Daily usage script recording☆12Sep 23, 2026Updated 3 weeks ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- De-novo Assembly Structural Variant Caller☆13Sep 15, 2016Updated 10 years ago
- i-ADHoRe is a highly sensitive software tool to detect degenerated homology relations within and between different genomes.☆18Jun 28, 2024Updated 2 years ago
- Process, visualize, and analyze phylogenetic trees☆13Updated this week
- Genome-Genome circle synteny☆25Oct 9, 2026Updated last week
- A tool to analyze synteny at the protein level.☆14Mar 28, 2018Updated 8 years ago
- Visualising discordant reads☆16Sep 2, 2015Updated 11 years ago
- Simple pipeline to go from an alignment to a neutral model, using the PHAST toolkit☆11Jan 17, 2020Updated 6 years ago