aubombarely / GenoToolBox
A box of genomics tools
☆21Updated 4 years ago
Related projects ⓘ
Alternatives and complementary repositories for GenoToolBox
- ☆32Updated 3 years ago
- Likelihood-based Selective Sweep Detection☆36Updated last year
- scripts for the project of seven thaliana genomes assembly☆38Updated 3 years ago
- ☆23Updated 2 months ago
- scripts to parse and analyse MCScanX collinearity output☆29Updated 4 years ago
- methods for orphan gene prediction paper optimization☆25Updated 2 years ago
- ☆21Updated 5 years ago
- Plant genome assembly and annotation pipeline using snakemake☆35Updated last year
- R package to draw syntenic plots in 3 different styles☆39Updated 11 months ago
- Genome Annotation Pipeline☆32Updated 3 months ago
- assembly evaluation tool☆34Updated 2 years ago
- Python wrappers for programs that search for transposable elements☆19Updated 8 years ago
- Gene model transfer from closely related reference genomes using cDNA alignments☆10Updated 4 years ago
- A tool for recovering synteny blocks from multiple alignment☆29Updated 3 years ago
- Pan-genome Construction and Population Structure Variation Calling pipeline☆34Updated 2 months ago
- ☆31Updated 4 years ago
- ☆41Updated 6 months ago
- General purpose population genetics software☆12Updated 5 years ago
- A quick user guide for de novo transposable element (TE) library generation and TE screening. Utilising; the Extensive de novo TE Annotat…☆28Updated last year
- ☆36Updated last year
- ☆16Updated last month
- Tool for assessing/improving assembly quality in extra-long tandem repeats☆45Updated 3 years ago
- We developed GenomeSyn as a new tool for constructing and visualizing genome synteny, its novel design and implementation can serve as a …☆23Updated 2 years ago
- Toolkit for evolutionary analyses of linkage groups☆23Updated 4 months ago
- Yet another Hi-C scaffolding tool☆19Updated last month
- A shiny application to visualize MCscan result☆33Updated 2 years ago
- A Plant Presence/absence Variants Scanner and Pan-genome Construction Pipeline☆26Updated 3 years ago
- A genome assembly assessment pipeline.☆36Updated last year
- Pipeline to detect PAVs (presence/absence variations) in genome comparison using whole genome alignment.☆29Updated 6 years ago
- Domain based annotation of transposable elements☆19Updated last month