aubombarely / GenoToolBoxLinks
A box of genomics tools
☆21Updated 4 years ago
Alternatives and similar repositories for GenoToolBox
Users that are interested in GenoToolBox are comparing it to the libraries listed below
Sorting:
- Likelihood-based Selective Sweep Detection☆39Updated last year
- a tool to identify species and inter-species hybrids and chromosome copy number variants from short-read data☆19Updated 5 years ago
- Pipeline to detect PAVs (presence/absence variations) in genome comparison using whole genome alignment.☆29Updated 7 years ago
- Genome alignment and synteny plots☆30Updated 2 years ago
- We developed GenomeSyn as a new tool for constructing and visualizing genome synteny, its novel design and implementation can serve as a …☆27Updated 3 years ago
- Convert RepeatMasker ".out" file into a gff3 with colors!!!☆21Updated 4 years ago
- Add multiple thread function for genome comparison☆15Updated 3 years ago
- Toolkit for evolutionary analyses of linkage groups☆32Updated last year
- R package to draw syntenic plots in 3 different styles☆41Updated last year
- A Plant Presence/absence Variants Scanner and Pan-genome Construction Pipeline☆27Updated 4 years ago
- Scripts to do haplotype analysis on pan genomes.☆21Updated 4 years ago
- scripts to parse and analyse MCScanX collinearity output☆32Updated 5 years ago
- B73Ab10 genome assembly methods☆16Updated 3 years ago
- ☆30Updated 5 years ago
- ☆27Updated 3 months ago
- Genome Annotation Pipeline☆36Updated 10 months ago
- TransposonPSI involves a PSI-blast search of a protein or nucleotide sequence against a set of profiles of proteins corresponding to majo…☆13Updated 5 years ago
- This python script can be used to detect Whole-genome duplication (WGD) with the dS based method.☆25Updated 6 years ago
- A genome assembly assessment pipeline.☆37Updated last year
- Draw a dot plot from a paf alignment☆30Updated 3 months ago
- scripts for the project of seven thaliana genomes assembly☆40Updated 4 years ago
- ☆32Updated 4 years ago
- ☆21Updated 5 years ago
- ☆27Updated 6 months ago
- reference-free estimation of ploidy level from whole genome sequencing data based on de Bruijn graph☆17Updated last year
- A tool for recovering synteny blocks from multiple alignment☆30Updated 3 years ago
- The GitHub repository for the A. thaliana pan-NLR'ome project.☆17Updated 6 years ago
- ☆25Updated 2 years ago
- SINE annotation tool for plant genomes☆17Updated last year
- Easily construct the ML species tree with single-copy gene shared by different species.☆27Updated 6 years ago