aubombarely / GenoToolBox
A box of genomics tools
☆21Updated 4 years ago
Alternatives and similar repositories for GenoToolBox:
Users that are interested in GenoToolBox are comparing it to the libraries listed below
- Likelihood-based Selective Sweep Detection☆37Updated last year
- TransposonPSI involves a PSI-blast search of a protein or nucleotide sequence against a set of profiles of proteins corresponding to majo…☆13Updated 4 years ago
- A tool for recovering synteny blocks from multiple alignment☆29Updated 3 years ago
- ☆21Updated 5 years ago
- Plant genome assembly and annotation pipeline using snakemake☆37Updated last year
- Gene model transfer from closely related reference genomes using cDNA alignments☆10Updated 4 years ago
- methods for orphan gene prediction paper optimization☆25Updated 3 years ago
- a tool to identify species and inter-species hybrids and chromosome copy number variants from short-read data☆17Updated 5 years ago
- Toolkit for evolutionary analyses of linkage groups☆26Updated 6 months ago
- Convert RepeatMasker ".out" file into a gff3 with colors!!!☆20Updated 4 years ago
- R package to draw syntenic plots in 3 different styles☆39Updated last year
- assembly evaluation tool☆34Updated 2 years ago
- A pipeline for scaffolding a genome assembly using Hi-C☆12Updated 2 years ago
- We developed GenomeSyn as a new tool for constructing and visualizing genome synteny, its novel design and implementation can serve as a …☆25Updated 3 years ago
- scripts to parse and analyse MCScanX collinearity output☆30Updated 4 years ago
- scripts for the project of seven thaliana genomes assembly☆38Updated 3 years ago
- Resources for the Col-CEN reference genome assemblies☆11Updated 2 years ago
- Reconstruction of ancestral genome maps☆16Updated 6 years ago
- ☆16Updated 3 months ago
- TELR is a fast non-reference transposable element detector from long read sequencing data.☆33Updated last year
- ☆31Updated 5 years ago
- A quick user guide for de novo transposable element (TE) library generation and TE screening. Utilising; the Extensive de novo TE Annotat…☆27Updated 2 years ago
- A genome assembly assessment pipeline.☆37Updated last year
- read and analyse RepeatMasker output☆24Updated last year
- ☆27Updated last year
- ☆32Updated 4 years ago
- Diploid genome assembly analysis tools☆14Updated 4 months ago
- ☆25Updated 3 years ago
- Modified TIR-Learner for Rice genome☆12Updated 5 years ago