guillemylla / Crickets_Genome_AnnotationLinks
Gennome annotation scripts for the crickets Gryllus bimaculatus and Laupala kohalensis.
☆13Updated 3 years ago
Alternatives and similar repositories for Crickets_Genome_Annotation
Users that are interested in Crickets_Genome_Annotation are comparing it to the libraries listed below
Sorting:
- ☆18Updated 2 years ago
- Genome alignment and synteny plots☆30Updated 2 years ago
- R package to draw syntenic plots in 3 different styles☆41Updated last year
- Chromosome-level synteny plotting using orthologous regions☆29Updated 10 months ago
- A shiny application to visualize MCscan result☆37Updated 2 years ago
- An R package to identify and classify duplicated genes from whole-genome protein sequence data☆27Updated this week
- Multi-genome synteny block visualization tool☆42Updated 6 months ago
- R package for comparison of synteny conservation at the genome-wide scale.☆14Updated last year
- Analyses of sex chromosome evolution in songbirds☆16Updated 6 years ago
- These are scripts that I use frequently in genome annotation projects. Some of them have evolved awkwardly so the code is difficult to fo…☆16Updated 7 years ago
- Toolkit for evolutionary analyses of linkage groups☆32Updated last year
- scripts for the project of seven thaliana genomes assembly☆40Updated 4 years ago
- reference-free estimation of ploidy level from whole genome sequencing data based on de Bruijn graph☆17Updated 2 years ago
- Perl script for manipulating multiple sequence alignments for phylogenetic reconstruction☆11Updated 10 years ago
- MCMCtreeR: A package to estimate distribution values for temporal node constraints and prepare input files for MCMCtree☆45Updated 5 years ago
- Tree House Explorer (THEx) is a novel genome browser for exploring phylogenetic and genomic data in one succinct place.☆14Updated last year
- Scripts and resources for the haploblocks manuscript☆16Updated 5 years ago
- ☆21Updated last week
- A quick user guide for de novo transposable element (TE) library generation and TE screening. Utilising; the Extensive de novo TE Annotat…☆27Updated 2 years ago
- Genome Annotation Pipeline☆36Updated 11 months ago
- A script that parses the OrthoFinder output and keeps only the orthogroups that meet specific criteria☆18Updated 4 years ago
- ☆32Updated 4 years ago
- ☆22Updated 3 years ago
- ☆21Updated this week
- scripts to parse and analyse MCScanX collinearity output☆32Updated 5 years ago
- a tree splitting and pruning algorithm for retrieving single-copy orthologs from gene family trees☆26Updated 5 months ago
- Convergent substitution detection tool based on the PCOC model☆31Updated 3 years ago
- A genome assembly assessment pipeline.☆37Updated last year
- SyntenyFinder contains a collection of scripts for performing and visualizing macrosynteny analyses. It supports annotated chromosome-lev…☆31Updated 6 months ago
- Methods for finding associations between phenotypic and genomic differences between species using the Forward Genomics framework☆23Updated 2 years ago