Homologizer: phasing gene copies into polyploid subgenomes
☆11Feb 3, 2026Updated 3 months ago
Alternatives and similar repositories for homologizer
Users that are interested in homologizer are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- PhyloSD: Phylogenomic Subgenome Detection pipeline☆11Jun 24, 2022Updated 3 years ago
- Multi-genome synteny block visualization tool☆57Apr 16, 2026Updated 3 weeks ago
- CATG (Collinearity-based Assembly correcTor GUI) is a tool that can correct genome assembly with collinearity and generate tour files for…☆18Jan 24, 2026Updated 3 months ago
- i-ADHoRe is a highly sensitive software tool to detect degenerated homology relations within and between different genomes.☆17Jun 28, 2024Updated last year
- A phylogeny dating method using least-squares algorithms and criteria☆32Oct 25, 2024Updated last year
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- ☆15Jun 6, 2023Updated 2 years ago
- Fast and frugal disk based k-mer counter☆14Apr 1, 2021Updated 5 years ago
- To phase, partition and visualize subgenomes of a neoallopolyploid or hybrid based on the subgenome-specific repetitive kmers.☆70Mar 23, 2025Updated last year
- Consensus genome annotation using OMA☆31Jan 14, 2026Updated 3 months ago
- an ensemble usage of MAFFT-linsi --add on large datasets☆13May 31, 2024Updated last year
- a tool to identify species and inter-species hybrids and chromosome copy number variants from short-read data☆19Sep 13, 2019Updated 6 years ago
- This tool performs an automatic identification, annotation, and analysis of the MYB gene family in plants. It can be applied to new trans…☆21Oct 12, 2025Updated 6 months ago
- ExTraMapper is a tool to find Exon and Transcript-level Mappings of a given pair of orthologous genes between two organisms using sequenc…☆11Apr 20, 2022Updated 4 years ago
- Genome assembly scaffolding using information from paired-end/mate-pair libraries, long reads, and synteny to closely related species.☆24Dec 6, 2018Updated 7 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- A software for gap filling in genome assemblies☆10Aug 12, 2022Updated 3 years ago
- ☆13May 27, 2025Updated 11 months ago
- GAPPadder is tool for closing gaps on draft genomes with short sequencing data☆28Jun 1, 2017Updated 8 years ago
- The RepeatScout 1.0.5, written by Pevzner et al., source code for browsing. The official release and more information are available at h…☆15Apr 14, 2023Updated 3 years ago
- recompute GFA link overlaps☆25Sep 14, 2022Updated 3 years ago
- T2Tools is a toolset contains several tools for T2T assembly, and it is under development.☆17Sep 17, 2025Updated 7 months ago
- ☆11Mar 12, 2026Updated last month
- Phylogenetic Network Inference without ILS☆19Jul 31, 2022Updated 3 years ago
- HiC-Hiker: A probabilistic model to determine contig orientation in chromosome-length scaffolds with Hi-C☆26Jan 14, 2021Updated 5 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- ☆24Mar 17, 2026Updated last month
- Implementation of the EM algorithm for the detection of shifts in a phylogeny.☆19Sep 24, 2025Updated 7 months ago
- SYNPHONI is a tool designed for reconstructing the dynamic evolution of syntenic relationships across all scales of phylogenetic distance…☆12May 7, 2023Updated 3 years ago
- ☆13Apr 21, 2026Updated 2 weeks ago
- de Bruijn graph cOrrectiOn from graph aLignment☆11Jul 20, 2020Updated 5 years ago
- Whole organelle genome-wide alignment construction method, which ultilizes BLAST tool, to facilitate phylogeny analysis☆15Aug 27, 2023Updated 2 years ago
- rnalib: a python-based transcriptomics library☆11Jan 23, 2026Updated 3 months ago
- (Greetings_here_is_yet_another) Rate of Adaptive Protein Evolution Software☆10Jul 19, 2024Updated last year
- misFinder: Identify mis-assemblies in an unbiased manner using reference and paired-end reads☆10Oct 17, 2015Updated 10 years ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Bayesian species delimitation integrating genes and traits☆12Aug 17, 2021Updated 4 years ago
- ☆49Mar 19, 2023Updated 3 years ago
- Automatically exported from code.google.com/p/densitree☆30Jul 27, 2025Updated 9 months ago
- de novo targeted gene assembly☆22Apr 16, 2021Updated 5 years ago
- Yet another Hi-C scaffolding tool☆22Oct 23, 2024Updated last year
- Bash scripts for analysis of Hyb-Seq data (from raw reads to species trees/networks)☆20Updated this week
- BigSeqKit: a parallel Big Data toolkit to process FASTA and FASTQ files at scale☆58Aug 6, 2023Updated 2 years ago