wf8 / homologizerLinks
Homologizer: phasing gene copies into polyploid subgenomes
☆11Updated 3 years ago
Alternatives and similar repositories for homologizer
Users that are interested in homologizer are comparing it to the libraries listed below
Sorting:
- The MafFilter genome alignment processor☆19Updated last week
- A program to generate a graph which presents a simplified representation of several full length genomes☆13Updated 7 years ago
- Reduction of Althaps and Duplicate Contigs for Improved Hi-C Scaffolding☆20Updated 9 months ago
- RegCloser is a genome gap-closing tool based on the robust regression approach, which is conceptually applicable to de novo assembly of N…☆15Updated last year
- Tree reconstruction of ancestry using incomplete lineage sorting☆11Updated 8 months ago
- ksrates is a tool to position whole-genome duplications relative to speciation events using substitution-rate-adjusted mixed paralog-orth…☆20Updated 3 months ago
- parallelLastz: Running Lastz in parallel☆17Updated last year
- ☆12Updated 5 years ago
- ☆15Updated 2 years ago
- Consensus genome annotation using OMA☆31Updated 6 months ago
- ☆30Updated last year
- A reliable gap filling pipeline for draft genomes☆11Updated 6 years ago
- Wrapper for short and long read mapping, creation of quality report(s) and estimation of genome size☆12Updated 2 months ago
- Tools for haplotype-wise reconstruction of pseudomolecules☆22Updated 3 months ago
- A nextflow pipeline for polishing CLR assemblies☆18Updated 2 years ago
- A Hi-C scaffolding method☆22Updated 4 years ago
- Hapo-G is a tool that aims to improve the quality of genome assemblies by polishing the consensus with accurate reads.☆26Updated 2 months ago
- Versatile tool for detecting selective sweeps with a variety of ages, strengths, starting allele frequencies, and completeness.☆15Updated last year
- Nucmer from Mummer3 followed by ggplot for nicer and more customisable genome alignment plots.☆11Updated 4 years ago
- convert a multi-sample VCF file to a multiple sequence alignment (C)☆15Updated 6 years ago
- Set of script for the paper on the cattle graph genome☆13Updated 2 years ago
- Pipeline to detect PAVs (presence/absence variations) in genome comparison using whole genome alignment.☆29Updated 7 years ago
- Merging assemblies by using adjacency algebraic model and classification☆22Updated 2 years ago
- Location of structural errors in a genome assembly and structural variations between a pair of genomes☆11Updated 6 years ago
- BUSCOMP: BUSCO Compiler and Comparison tool☆21Updated last year
- Map TIR-pHMM models to genomic sequences for annotation of MITES and complete DNA-Transposons.☆10Updated 5 months ago
- Efficient indexing and querying of annotations in a pangenome graph☆10Updated 2 months ago
- Better Alignments with Translated HMMER☆24Updated last week
- Scripts to do haplotype analysis on pan genomes.☆20Updated 5 years ago
- chloroplast genome assembly using long reads data☆13Updated 5 months ago