amsession / Kmer-based-Subgenome-MappingLinks
☆21Updated last year
Alternatives and similar repositories for Kmer-based-Subgenome-Mapping
Users that are interested in Kmer-based-Subgenome-Mapping are comparing it to the libraries listed below
Sorting:
- A genome assembly assessment pipeline.☆37Updated last year
- A tool for quick and accurate calculation of syntenic diversity.☆42Updated last month
- ☆28Updated 6 months ago
- This repository contains relevant code and explanation for ”Leveraging a phased pangenome to design ideal haplotypes for hybrid potato br…☆32Updated this week
- ☆31Updated 9 months ago
- ☆24Updated last year
- ☆25Updated 3 years ago
- Python scripts to run tandem repeat finder program (Benson, 1999) and parse the results☆12Updated 6 years ago
- Automated pipeline for running CoalHMM☆13Updated last year
- An Example of Subgenome Phasing for Complex Allopolyploidy☆13Updated 5 months ago
- Dynamic Elongation of a Genome Assembly Path☆22Updated last year
- ☆32Updated 7 months ago
- HELIANO is a software for detection and classification of Helitron-like elements.☆31Updated 4 months ago
- ☆28Updated 3 years ago
- Centromics: visualing centromeres with multiple omics data☆24Updated 7 months ago
- Python script calculating transposable element density for all genes in a genome. Publication: https://mobilednajournal.biomedcentral.com…☆34Updated last year
- Robust identification of orthologous Synteny with the Orthology Index☆33Updated this week
- Analyses of sex chromosome evolution in songbirds☆16Updated 6 years ago
- ☆16Updated 3 years ago
- Centromics: visualing centromeres with multiple omics data☆20Updated last year
- A personal pipeline to calculate Ka,Ks and Ka/Ks using PAML-yn00 with YN method☆10Updated 8 months ago
- ☆38Updated 3 months ago
- ☆40Updated 2 years ago
- This is a method to find telomeres and centromeres in plants.☆42Updated 2 years ago
- We developed GenomeSyn as a new tool for constructing and visualizing genome synteny, its novel design and implementation can serve as a …☆30Updated 3 years ago
- wgd v2: a suite of tools to uncover and date ancient polyploidy and whole-genome duplication☆37Updated 8 months ago
- C-Phasing/CPhasing: Phasing and scaffolding polyploid genomes based on Pore-C, HiFi-C/CiFi or Hi-C.☆64Updated 3 months ago
- A gap-closing software tool that uses long reads to enhance genome assembly.☆19Updated last year
- An accurate and widely applicable pangenome graph-based variant genotyper for diploid and polyploid genomes☆41Updated last month
- Detecting transposable element invasions without repeat library. Detects also horizontal transfer events and endogenized viruses. All you…☆17Updated 11 months ago