amsession / Kmer-based-Subgenome-Mapping
☆20Updated 7 months ago
Alternatives and similar repositories for Kmer-based-Subgenome-Mapping:
Users that are interested in Kmer-based-Subgenome-Mapping are comparing it to the libraries listed below
- ☆23Updated 3 years ago
- ☆27Updated 2 years ago
- A tool for quick and accurate calculation of syntenic diversity.☆34Updated 2 months ago
- Dynamic Elongation of a Genome Assembly Path☆21Updated 10 months ago
- Python scripts to run tandem repeat finder program (Benson, 1999) and parse the results☆12Updated 6 years ago
- ☆27Updated 3 years ago
- A genome assembly assessment pipeline.☆37Updated last year
- ☆32Updated 4 months ago
- ☆29Updated 2 months ago
- Centromics: visualing centromeres with multiple omics data☆22Updated 2 weeks ago
- Centromics: visualing centromeres with multiple omics data☆18Updated last year
- scripts for the project of seven thaliana genomes assembly☆38Updated 3 years ago
- ☆22Updated last year
- ☆29Updated this week
- Instruction and scripts for reconstructing ancestral genome from pairwise syntenic blocks using MLGO☆13Updated 6 years ago
- We developed GenomeSyn as a new tool for constructing and visualizing genome synteny, its novel design and implementation can serve as a …☆25Updated 3 years ago
- ☆29Updated 6 months ago
- This repository contains relevant code and explanation for ”Leveraging a phased pangenome to design ideal haplotypes for hybrid potato br…☆27Updated last month
- zgtools: A pipeline that allows for the convenient acquisition of T2T (Telomere-to-Telomere) genomes.☆28Updated 2 months ago
- A rapid and accurate ensemble pipeline for graph-based variant genotyping with lower depth of short reads☆37Updated 8 months ago
- HiCAT new project☆27Updated last year
- Python script calculating transposable element density for all genes in a genome. Publication: https://mobilednajournal.biomedcentral.com…☆31Updated 5 months ago
- ☆21Updated last year
- wgd v2: a suite of tools to uncover and date ancient polyploidy and whole-genome duplication☆33Updated last month
- ☆39Updated 2 years ago
- Reconstruction of ancestral genome maps☆16Updated 6 years ago
- Toolkit for evolutionary analyses of linkage groups☆27Updated 8 months ago
- ☆16Updated 2 years ago
- reference-free estimation of ploidy level from whole genome sequencing data based on de Bruijn graph☆16Updated last year
- Automated pipeline for running CoalHMM☆12Updated last year