PengNi / ccsmethphaseLinks
Methylatino phasing using PacBio CCS reads
☆14Updated last year
Alternatives and similar repositories for ccsmethphase
Users that are interested in ccsmethphase are comparing it to the libraries listed below
Sorting:
- SV calling for diploid assemblies☆30Updated last year
- ☆31Updated 6 years ago
- Create a pseudohaploid assembly from a partially resolved diploid assembly☆32Updated 6 years ago
- A module for improving the insertion sequences of structural variant calls☆33Updated 4 years ago
- use variant nesting information to flter overlapping sites from vg deconstruct output☆31Updated 7 months ago
- ☆31Updated 10 months ago
- A Hi-C scaffolding method☆22Updated 4 years ago
- ☆44Updated last year
- building a human pangenome from the HPRCy1v2 genbank accessioned assemblies☆15Updated 2 years ago
- This repository contains relevant code and explanation for ”Leveraging a phased pangenome to design ideal haplotypes for hybrid potato br…☆34Updated 3 months ago
- plot genome alignment synteny☆21Updated 5 years ago
- Tool for globally phasing diploid assembly graphs with orthogonal data☆43Updated last year
- lace up GFA files using panSN path name sub-ranges to coordinate the lacing☆14Updated 6 months ago
- Integrate multiple genome assemblies into a pangenome graph☆35Updated 3 years ago
- Python scripts to run tandem repeat finder program (Benson, 1999) and parse the results☆13Updated 6 years ago
- ☆16Updated 3 years ago
- ☆38Updated last month
- ☆32Updated last year
- Tool for assessing/improving assembly quality in extra-long tandem repeats☆47Updated 4 years ago
- ☆21Updated last year
- Convert RepeatMasker ".out" file into a gff3 with colors!!!☆24Updated 5 years ago
- Pipeline to detect PAVs (presence/absence variations) in genome comparison using whole genome alignment.☆29Updated 7 years ago
- Domain based annotation of transposable elements☆21Updated 4 months ago
- Fast and frugal disk based k-mer counter☆14Updated 4 years ago
- Add multiple thread function for genome comparison☆16Updated 4 years ago
- ☆26Updated 2 weeks ago
- Construct and Analyze the North American Vitis pangenome☆29Updated 5 months ago
- The tools are used for displaying hic signal of genome☆24Updated 5 years ago
- ☆21Updated last year
- This is used to achieve haplotype-resolved assembly of tetraploid genomes using gamete sequencings☆12Updated 4 years ago