zeqianli / tgvView external linksLinks
Explore genomes in the terminal. Light, blazing fast 🚀, vim-motion.
☆435Jan 28, 2026Updated 2 weeks ago
Alternatives and similar repositories for tgv
Users that are interested in tgv are comparing it to the libraries listed below
Sorting:
- Fast approximate string searching☆99Updated this week
- expressions on VCFs☆91Apr 19, 2025Updated 9 months ago
- Robust individual and aggregate checksums for nucleotide sequences☆17Feb 8, 2026Updated last week
- Catalogue of pairwise alignment algorithms and benchmarks☆25Jan 6, 2026Updated last month
- A bioinformatics tool written in Rust to find palindromic sequences in DNA☆38Aug 29, 2025Updated 5 months ago
- A high efficiency binary format for sequencing data☆95Jan 24, 2026Updated 3 weeks ago
- Whole Genome Alignment Tools☆213Nov 6, 2025Updated 3 months ago
- ☆21Dec 26, 2025Updated last month
- Pairwise whole genome aligner☆227Jan 21, 2026Updated 3 weeks ago
- Compacted and colored de Bruijn graph construction and querying☆92Dec 7, 2025Updated 2 months ago
- Rust bindings to minimap2 library☆108Feb 2, 2026Updated last week
- Fast FASTX parsing and k-mer methods in Rust☆209Jan 27, 2026Updated 2 weeks ago
- Tool for plotting sequencing data along genomic coordinates.☆336Dec 12, 2025Updated 2 months ago
- implicit pangenome graph☆88Feb 9, 2026Updated last week
- Fast and exact gap-affine partial order alignment☆59Feb 3, 2026Updated last week
- Fast and Memory Efficient Genome Sketching via HyperLogLog, HyperMinHash and UltraLogLog☆19Jan 22, 2026Updated 3 weeks ago
- Efficient, parallel compression for terabyte-scale data☆58Sep 27, 2025Updated 4 months ago
- bioinformatics toolkit in rust☆93Sep 28, 2025Updated 4 months ago
- An efficient CLI to extract sequences from the SRA☆120Jan 30, 2026Updated 2 weeks ago
- MetaMDBG: a lightweight assembler for long and accurate metagenomics reads.☆199Feb 2, 2026Updated last week
- Fast interval intersection library☆44Aug 20, 2025Updated 5 months ago
- base-accurate DNA sequence alignments using WFA and mashmap3☆210Jan 30, 2026Updated 2 weeks ago
- Generate random test data for bioinformatics☆27Jun 17, 2024Updated last year
- Wavefront alignment algorithm (WFA) in Golang☆32Jul 26, 2025Updated 6 months ago
- Fast, robust ANI and aligned fraction for (metagenomic) genomes and contigs.☆235Oct 12, 2025Updated 4 months ago
- Identify long STRs, VNTRs, satellite DNA and other low-complexity regions in a genome☆86Jan 28, 2026Updated 2 weeks ago
- FMSI is a highly memory efficient exact k-mer set index based on masked superstrings and the masked Burrows-Wheeler transform☆23Nov 20, 2025Updated 2 months ago
- Fast DNA search and [host] depletion using minimizers☆97Feb 4, 2026Updated last week
- Taxonomy classification of viral sequences / contigs☆12Jul 15, 2025Updated 7 months ago
- Genome browser and variant annotation☆387Oct 30, 2025Updated 3 months ago
- Align proteins to genomes with splicing and frameshift☆395Jan 5, 2026Updated last month
- Panacus is a tool for computing statistics for GFA-formatted pangenome graphs☆119Feb 3, 2026Updated last week
- Rust library for processing sequencing reads.☆25Sep 2, 2024Updated last year
- Universal and efficient structure-based core gene phylogeny with Foldseek and ProstT5☆84Nov 13, 2025Updated 3 months ago
- PAF (pairwise alignment format) validator based on extended CIGAR strings☆15Aug 10, 2025Updated 6 months ago
- Grep for FASTQ files☆103Dec 17, 2025Updated last month
- Genome size estimation from long read overlaps☆80Dec 1, 2025Updated 2 months ago
- ultrafast taxonomic profiling and genome querying for metagenomic samples by abundance-corrected minhash.☆290Feb 3, 2026Updated last week
- A Rust library providing fully dynamic sets of k-mers with high locality☆47Updated this week