zeqianli / tgvLinks
Explore genomes in the terminal. Light, blazing fast 🚀, vim-motion.
☆408Updated last week
Alternatives and similar repositories for tgv
Users that are interested in tgv are comparing it to the libraries listed below
Sorting:
- Align proteins to genomes with splicing and frameshift☆382Updated last month
- Genome browser and variant annotation☆385Updated 2 months ago
- a long read simulator that can imitate many types of read problems☆246Updated last year
- Download FASTQ files from SRA or ENA repositories.☆348Updated 4 months ago
- Randomly subsample sequencing reads or alignments☆244Updated last week
- Nanopore demultiplexing, QC and alignment pipeline☆213Updated 2 weeks ago
- HERRO is a highly-accurate, haplotype-aware, deep-learning tool for error correction of Nanopore R10.4.1 or R9.4.1 reads (read length of …☆231Updated 2 weeks ago
- Read-based phasing of genomic variants, also called haplotype assembly☆386Updated 4 months ago
- Transcript assembly and quantification for RNA-Seq☆470Updated last week
- A genome visualization python package for comparative genomics☆372Updated 3 weeks ago
- GraffiTE is a pipeline that finds polymorphic transposable elements in genome assemblies and/or long reads, and genotypes the discovered …☆206Updated 3 weeks ago
- A curated list of awesome nanopore analysis tools.☆300Updated 3 months ago
- Read alignment statistics for metagenomics☆377Updated last week
- SortMeRNA: next-generation sequence filtering and alignment tool☆277Updated 2 months ago
- Tool for plotting sequencing data along genomic coordinates.☆319Updated 4 months ago
- A bioinformatics tool for working with modified bases☆220Updated last month
- GFF/GTF utility providing format conversions, region filtering, FASTA sequence extraction and more☆443Updated 10 months ago
- Whole Genome Alignment Tools☆210Updated last week
- Transcript discovery and quantification with long RNA reads (Nanopores and PacBio)☆192Updated last week
- Plot structural variant signals from many BAMs and CRAMs☆555Updated last year
- Synteny and Rearrangement Identifier☆419Updated 6 months ago
- This Snakemake pipeline implements the GATK best-practices workflow☆260Updated 2 years ago
- An accurate GFF3/GTF lift over pipeline☆509Updated 2 years ago
- Pipeline to fetch metadata and raw FastQ files from public databases☆183Updated last week
- Nanopore sequence read simulator☆284Updated 7 months ago
- Tool to plot synteny and structural rearrangements between genomes☆326Updated 6 months ago
- GFF and GTF file manipulation and interconversion☆308Updated last year
- Nextflow training material☆195Updated this week
- Python application to generate self-contained pages embedding IGV visualizations, with no dependency on original input files.☆385Updated last week
- Tool for the Quality Control of Long-Read Defined Transcriptomes☆240Updated last week