Alternatives and similar repositories for lcg:

Users that are interested in lcg are comparing it to the libraries listed below

• VGP / vgp-tools
  ☆28Updated last year
• lh3 / sdust
  Symmetric DUST for finding low-complexity regions in DNA sequences
  ☆34Updated last year
• lh3 / miniwfa
  A reimplementation of the WaveFront Alignment algorithm at low memory
  ☆49Updated 7 months ago
• marschall-lab / GFAffix
  GFAffix identifies walk-preserving shared affixes in variation graphs and collapses them into a non-redundant graph structure.
  ☆35Updated last week
• rcedgar / urmap
  URMAP ultra-fast read mapper
  ☆38Updated 4 years ago
• jermp / fulgor
  Fulgor is a fast and space-efficient colored de Bruijn graph index.
  ☆46Updated this week
• seryrzu / unialigner
  ☆64Updated 9 months ago
• richarddurbin / modimizer
  a toolset for fast DNA read set matching and assembly using a new type of reduced kmer
  ☆37Updated 3 years ago
• tlemane / kmindex
  Index kmtricks bf matrices
  ☆43Updated last month
• oma219 / spumoni
  Pan-Genomic Matching Statistics
  ☆48Updated 9 months ago
• kamimrcht / REINDEER
  REINDEER REad Index for abuNDancE quERy
  ☆57Updated 5 months ago
• ekimb / mapquik
  Efficient low-divergence mapping of long reads in minimizer space
  ☆64Updated last year
• HKU-BAL / MegaGTA
  HMM-guided metagenomic gene-targeted assembler using iterative de Bruijn graphs
  ☆17Updated 8 years ago
• tlemane / kmdiff
  Differential k-mer analysis
  ☆34Updated 11 months ago
• mourisl / centrifuger
  Classifier for metagenomic sequences using FM-index with run-block compressed BWT.
  ☆52Updated 2 weeks ago
• bcgsc / physlr
  Construct a Physical Map from Linked Reads
  ☆18Updated 9 months ago
• edawson / gfakluge
  A C++ library and utilities for manipulating the Graphical Fragment Assembly format.
  ☆52Updated 2 years ago
• vikshiv / mumemto
  Mumemto: multi-MUM and MEM finding across pangenomes
  ☆59Updated this week
• thegenemyers / ONEcode
  1-code framework: docs, C-library, and tools
  ☆15Updated last month
• Kmer-File-Format / kff-reference
  Contains the description of a file format to store kmers and associated values
  ☆32Updated 2 years ago
• ZekunYin / RabbitMash
  RabbitMash: an efficient highly optimized implementation of Mash.
  ☆21Updated last year
• PacificBiosciences / sawfish
  Structural variant discovery and genotyping from mapped PacBio HiFi data
  ☆36Updated this week
• Parsoa / SVDSS
  Improved structural variant discovery in accurate long reads using sample-specific strings (SFS)
  ☆42Updated 2 months ago
• lh3 / gffio
  ☆32Updated 2 years ago
• shenwei356 / wfa
  Wavefront alignment algorithm (WFA) in Golang
  ☆30Updated 2 months ago
• EvolBioInf / fur
  Find Unique genomic Regions
  ☆29Updated last week
• Kmer-File-Format / kff-tools
  ☆17Updated last year
• lbcb-sci / ra
  Assembler for raw de novo genome assembly of long uncorrected reads.
  ☆37Updated 5 years ago
• lh3 / lv89
  C implementation of the Landau-Vishkin algorithm
  ☆35Updated 2 years ago