Efficient, parallel compression for terabyte-scale data
☆64Feb 25, 2026Updated 6 months ago
Alternatives and similar repositories for lcg
Users that are interested in lcg are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Efficient construction of the BWT using string compression☆23May 26, 2026Updated 3 months ago
- R-Index-F Library for Pattern Matching☆12Aug 8, 2024Updated 2 years ago
- Identifying large scale inversions between two genomes by mapping genome 1's unique kmers onto genome 2.☆10Jun 6, 2025Updated last year
- BWT construction and search☆130Updated this week
- Iterate k-min-mers from a DNA sequence in Rust☆13Apr 8, 2024Updated 2 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- A very fast interval tree data structure☆136Feb 3, 2025Updated last year
- Fast and exact gap-affine partial order alignment☆71Apr 25, 2026Updated 4 months ago
- Pairwise whole genome aligner☆244Jul 29, 2026Updated last month
- Taxonomy classification of viral sequences / contigs☆13Jul 15, 2025Updated last year
- ☆19May 10, 2023Updated 3 years ago
- A SIMD-accelerated library to compute random minimizers☆46Aug 26, 2026Updated last week
- Single-cache-miss rank queries over size 2 and 4 alphabets. 2x faster than all other Rust crates.☆15Apr 1, 2026Updated 5 months ago
- Mumemto: multi-MUM and MEM finding across pangenomes☆137Jul 29, 2026Updated last month
- MEMO: MEM-based pangenome indexing for k-mer queries☆20Jun 11, 2024Updated 2 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- ☆21Feb 15, 2025Updated last year
- Catalogue of pairwise alignment algorithms and benchmarks☆25Jan 6, 2026Updated 7 months ago
- Fast sequence distance estimates☆32Aug 24, 2026Updated last week
- Optimal distance lower bound k-mer sampling.☆12Jun 19, 2024Updated 2 years ago
- ☆17Aug 8, 2025Updated last year
- Code for the paper Aligning Distant Sequences to Graphs using Long Seed Sketches.☆13Nov 1, 2022Updated 3 years ago
- Fast FASTA/Q parser and writer (C++ re-implementation of kseq library)☆57Mar 4, 2024Updated 2 years ago
- a C++ API of htslib to be easily integrated and safely used. More importantly, it can be callled seamlessly in R/Python/Julia etc.☆26Jun 7, 2026Updated 2 months ago
- A bioinformatics tool written in Rust to find palindromic sequences in DNA☆39Feb 20, 2026Updated 6 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Fast DNA search and [host] depletion using minimizers☆126Aug 26, 2026Updated last week
- Fast and Memory Efficient Genome Sketching via HyperLogLog, HyperMinHash, UltraLogLog and ExaLogLog☆22Aug 19, 2026Updated 2 weeks ago
- ⚡️ 🧬 Fulgor is a fast and space-efficient colored de Bruijn graph index.☆60Updated this week
- Simple pileup-based variant caller☆95Apr 25, 2025Updated last year
- syncmer graphs, and perhaps other sorts of sequence graphs☆44Aug 28, 2026Updated last week
- KmerCamel🐫 provides implementations of several algorithms for efficiently representing a set of k-mers as a masked superstring.☆20Jul 24, 2026Updated last month
- base-accurate DNA sequence alignments using WFA and mashmap3☆222Aug 27, 2026Updated last week
- Compute bottom-s sketches and s-buckets sketches, using simd-minimizers crate.☆21Aug 26, 2026Updated last week
- BLEND is a mechanism that can efficiently find fuzzy seed matches between sequences to significantly improve the performance and accuracy…☆47May 10, 2023Updated 3 years ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- Fast approximate string searching☆165Aug 11, 2026Updated 3 weeks ago
- Fast interval intersection library☆46Jul 14, 2026Updated last month
- BAM/SAM/CRAM/FASTA reader, pileup engine, BCF/BAM writing☆28Updated this week
- An extensible and performant aligner and read mapper☆103Jul 27, 2026Updated last month
- A minimal copy fastq and fasta reader built for parallel support and paired end processing☆49Aug 19, 2026Updated 2 weeks ago
- A versatile pairwise aligner for genomic and spliced nucleotide sequences☆24Sep 12, 2025Updated 11 months ago
- Successor of bwa-mem for short-read alignment☆335Aug 13, 2026Updated 3 weeks ago