brianli314 / palindrome-finderView external linksLinks
A bioinformatics tool written in Rust to find palindromic sequences in DNA
☆38Aug 29, 2025Updated 5 months ago
Alternatives and similar repositories for palindrome-finder
Users that are interested in palindrome-finder are comparing it to the libraries listed below
Sorting:
- Taxonomy classification of viral sequences / contigs☆12Jul 15, 2025Updated 7 months ago
- Wavefront alignment algorithm (WFA) in Golang☆32Jul 26, 2025Updated 6 months ago
- PAF (pairwise alignment format) validator based on extended CIGAR strings☆15Aug 10, 2025Updated 6 months ago
- A Rust library providing fully dynamic sets of k-mers with high locality☆47Updated this week
- a precise pangenome browser combining linear and graph-based pan-genome☆13Jul 16, 2024Updated last year
- Python wrapper for wavefront alignment using WFA2-lib☆38Nov 19, 2024Updated last year
- HAlign 4: A New Strategy for Rapidly Aligning Millions of Sequences☆16Feb 6, 2026Updated last week
- gia: Genomic Interval Arithmetic☆66Aug 21, 2024Updated last year
- GBZ file format for pangenome graphs☆45Updated this week
- A "Navie" Implementation of the Wavefront Algorithm For Sequence Alignment with Gap-Affine Scoring☆14Aug 7, 2023Updated 2 years ago
- ☆17Oct 7, 2024Updated last year
- ☆13Dec 26, 2025Updated last month
- Efficient, parallel compression for terabyte-scale data☆60Sep 27, 2025Updated 4 months ago
- Simple pileup-based variant caller☆94Apr 25, 2025Updated 9 months ago
- implicit pangenome graph☆88Feb 9, 2026Updated last week
- Computational Pangenomics☆17Jun 1, 2022Updated 3 years ago
- Shared k-mer content between two genomes☆19Jun 21, 2023Updated 2 years ago
- Fast sequence distance estimates☆26Jan 29, 2026Updated 2 weeks ago
- Long read aligner for cyclic and acyclic pangenome graphs☆40Dec 20, 2023Updated 2 years ago
- An accurate aligner of long reads to a variation graph, based on co-linear chaining☆34May 23, 2025Updated 8 months ago
- A k-mer search engine for all Sequence Read Archive public accessions☆36Oct 29, 2024Updated last year
- Efficient low-divergence mapping of long reads in minimizer space☆70Oct 7, 2023Updated 2 years ago
- base-accurate DNA sequence alignments using WFA and mashmap3☆210Jan 30, 2026Updated 2 weeks ago
- ☆13Dec 3, 2024Updated last year
- MEMO: MEM-based pangenome indexing for k-mer queries☆20Jun 11, 2024Updated last year
- ☆21Dec 26, 2025Updated last month
- ☆18Jan 29, 2025Updated last year
- Evaluating genome assemblies☆114Jan 11, 2026Updated last month
- Efficient and fast querying and parsing of GTDB's data☆29Aug 21, 2025Updated 5 months ago
- Exploration of controlled loss of quality values for compressing CRAM files☆36Feb 23, 2023Updated 2 years ago
- Genome size estimation from long read overlaps☆80Dec 1, 2025Updated 2 months ago
- Whole Genome Alignment Tools☆213Nov 6, 2025Updated 3 months ago
- Split k-mer analysis – version 2☆104Jan 29, 2026Updated 2 weeks ago
- Everything but the kitchen sink☆12Feb 6, 2025Updated last year
- Identifying large scale inversions between two genomes by mapping genome 1's unique kmers onto genome 2.☆10Jun 6, 2025Updated 8 months ago
- Compares pangenome graphs by calculating the segmentation distance between two GFA (Graphical Fragment Assembly) files.☆13Oct 1, 2025Updated 4 months ago
- ☆46Nov 21, 2025Updated 2 months ago
- GBWT-based handle graph☆31Updated this week
- FMSI is a highly memory efficient exact k-mer set index based on masked superstrings and the masked Burrows-Wheeler transform☆23Nov 20, 2025Updated 2 months ago