brianli314 / palindrome-finderLinks
A bioinformatics tool written in Rust to find palindromic sequences in DNA
☆35Updated 6 months ago
Alternatives and similar repositories for palindrome-finder
Users that are interested in palindrome-finder are comparing it to the libraries listed below
Sorting:
- Wavefront alignment algorithm (WFA) in Golang☆30Updated last month
- Long read aligner for cyclic and acyclic pangenome graphs☆39Updated last year
- process any file in tabular format. Fasta/fastq/GTF/GFF/VCF/SAM/BED☆21Updated last week
- ☆44Updated last month
- A FASTA/FASTQ format parser library☆20Updated last year
- A k-mer search engine for all Sequence Read Archive public accessions☆31Updated 10 months ago
- Lightweight mosaic/somatic SV caller for long reads (WIP)☆29Updated 8 months ago
- Dividing heterogeneous long-read sequencing into groups with de Bruijn graphs☆25Updated 9 months ago
- ☆32Updated 2 years ago
- GFAffix identifies walk-preserving shared affixes in variation graphs and collapses them into a non-redundant graph structure.☆37Updated 3 months ago
- gia: Genomic Interval Arithmetic☆65Updated last year
- HyGen: Compact and Efficient Genome Sketching using Hyperdimensional Vectors☆29Updated last year
- Fast and exact gap-affine partial order alignment☆54Updated last month
- A bioinformatics tool for viewing and calculating base modification frequencies from BAM files☆35Updated last month
- Remove human reads from a sequencing run☆40Updated last month
- Fast long-read mapper and whole-genome aligner (accelerated version of minimap2)☆33Updated 2 months ago
- Given a set of kmers (fasta format) and a set of sequences (fasta format), this tool will extract the sequences containing the kmers.☆21Updated last year
- Improved structural variant discovery in accurate long reads using sample-specific strings (SFS)☆44Updated 2 months ago
- Find Unique genomic Regions☆30Updated this week
- Shared k-mer content between two genomes☆18Updated 2 years ago
- Filter of Pairwise Alignement☆45Updated 3 years ago
- Software that separates very close sequences that have been collapsed during assembly. Uses only long reads.☆35Updated 4 months ago
- Correcting errors in noisy long reads using variation graphs☆52Updated 2 years ago
- Better Alignments with Translated HMMER☆21Updated this week
- This tools counts the number of specific k-mers within sequence data. The counts can then be compare to other counts to determine to comp…☆29Updated 9 months ago
- Non-redundant pangenome assemblies from multiple genomes or bins☆13Updated 3 months ago
- PanTax: Strain-level metagenomic profiling using pangenome graphs☆41Updated last week
- PGR-TK: Pangenome Research Tool Kit☆17Updated 5 months ago
- Viral genome coverage evaluation for metagenomic diagnostics☆28Updated last week
- Extracts subgraphs or components from a graph in GFA format☆24Updated 9 months ago