brianli314 / palindrome-finder
A bioinformatics tool written in Rust to find palindromic sequences in DNA
☆34Updated 3 months ago
Alternatives and similar repositories for palindrome-finder:
Users that are interested in palindrome-finder are comparing it to the libraries listed below
- process any file in tabular format. Fasta/fastq/GTF/GFF/VCF/SAM/BED☆22Updated 2 months ago
- ☆32Updated 2 years ago
- Lightweight mosaic/somatic SV caller for long reads (WIP)☆28Updated 5 months ago
- Wavefront alignment algorithm (WFA) in Golang☆29Updated 6 months ago
- Kmer Analysis of Pileups for Genotyping☆29Updated 3 weeks ago
- ☆41Updated 2 months ago
- Long read aligner for cyclic and acyclic pangenome graphs☆36Updated last year
- A FASTA/FASTQ format parser library☆20Updated last year
- Correcting errors in noisy long reads using variation graphs☆51Updated 2 years ago
- Implementation of ToL genome assembly workflows☆20Updated last week
- Fast long-read mapper and whole-genome aligner (accelerated version of minimap2)☆31Updated this week
- ☆17Updated last year
- Tumour-only somatic mutation calling using long reads☆26Updated 6 months ago
- Dividing heterogeneous long-read sequencing into groups with de Bruijn graphs☆23Updated 5 months ago
- a lexicographically-based GTF/GFF sorter☆34Updated last week
- Extracts subgraphs or components from a graph in GFA format☆23Updated 5 months ago
- MEMO: MEM-based pangenome indexing for k-mer queries☆18Updated 10 months ago
- fast, multithreaded sourmash operations: search, compare, and gather.☆22Updated this week
- Software that separates very close sequences that have been collapsed during assembly. Uses only long reads.☆34Updated 2 weeks ago
- A k-mer search engine for all Sequence Read Archive public accessions☆29Updated 6 months ago
- ☆12Updated 5 months ago
- ☆18Updated 2 months ago
- Fast and exact gap-affine partial order alignment☆50Updated 3 weeks ago
- Population-scale detection of non-reference sequence variants using colored de Bruijn Graphs☆24Updated last year
- Given a set of kmers (fasta format) and a set of sequences (fasta format), this tool will extract the sequences containing the kmers.☆21Updated last year
- URMAP ultra-fast read mapper☆38Updated 4 years ago
- Improved structural variant discovery in accurate long reads using sample-specific strings (SFS)☆42Updated last week
- a python package for finding tandem repeats from genomic sequences☆16Updated last month
- GFAffix identifies walk-preserving shared affixes in variation graphs and collapses them into a non-redundant graph structure.☆36Updated last month
- PGR-TK: Pangenome Research Tool Kit☆14Updated last month