A bioinformatics tool written in Rust to find palindromic sequences in DNA
☆39Feb 20, 2026Updated 5 months ago
Alternatives and similar repositories for palindrome-finder
Users that are interested in palindrome-finder are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Taxonomy classification of viral sequences / contigs☆12Jul 15, 2025Updated last year
- plane sweep filtering genome alignments☆24Jul 25, 2026Updated 2 weeks ago
- Wavefront alignment algorithm (WFA) in Golang☆32Jul 10, 2026Updated last month
- a precise pangenome browser combining linear and graph-based pan-genome☆13Jul 16, 2024Updated 2 years ago
- PAF (pairwise alignment format) validator based on extended CIGAR strings☆15Aug 10, 2025Updated last year
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Python wrapper for wavefront alignment using WFA2-lib☆39Nov 19, 2024Updated last year
- A Rust library providing fully dynamic sets of k-mers with high locality☆47May 13, 2026Updated 2 months ago
- Shared k-mer content between two genomes☆18Jun 21, 2023Updated 3 years ago
- gia: Genomic Interval Arithmetic☆67Aug 21, 2024Updated last year
- syncmer graphs, and perhaps other sorts of sequence graphs☆44Jul 31, 2026Updated last week
- Computational Pangenomics☆17Jun 1, 2022Updated 4 years ago
- Genome size estimation from long read overlaps☆92Updated this week
- Simple pileup-based variant caller☆96Apr 25, 2025Updated last year
- GBZ file format for pangenome graphs☆46Apr 18, 2026Updated 3 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Fast and exact gap-affine partial order alignment☆69Apr 25, 2026Updated 3 months ago
- ☆16Jul 23, 2026Updated 2 weeks ago
- Identifying large scale inversions between two genomes by mapping genome 1's unique kmers onto genome 2.☆10Jun 6, 2025Updated last year
- A "Navie" Implementation of the Wavefront Algorithm For Sequence Alignment with Gap-Affine Scoring☆14May 29, 2026Updated 2 months ago
- Long read aligner for cyclic and acyclic pangenome graphs☆41Dec 20, 2023Updated 2 years ago
- bioinformatics toolkit in rust☆107Jul 16, 2026Updated 3 weeks ago
- Efficient, parallel compression for terabyte-scale data☆64Feb 25, 2026Updated 5 months ago
- HiSV: a computational pipeline for structural variation detection from Hi-C data☆18Jun 20, 2025Updated last year
- Exploration of controlled loss of quality values for compressing CRAM files☆36Feb 23, 2023Updated 3 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Efficient low-divergence mapping of long reads in minimizer space☆70Oct 7, 2023Updated 2 years ago
- Everything but the kitchen sink☆13Feb 6, 2025Updated last year
- Rust bindings to minimap2 library☆113May 3, 2026Updated 3 months ago
- PG-SCUnK mesure quality of Pan-Genome Graphs using Single Copy and Universal k-mers☆25Feb 16, 2026Updated 5 months ago
- base-accurate DNA sequence alignments using WFA and mashmap3☆220Jul 26, 2026Updated 2 weeks ago
- implicit pangenome graph☆110Updated this week
- An accurate aligner of long reads to a variation graph, based on co-linear chaining☆35May 23, 2025Updated last year
- ☆18Jan 29, 2025Updated last year
- ☆20Jan 13, 2026Updated 6 months ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- ☆14Dec 26, 2025Updated 7 months ago
- Evaluating genome assemblies☆125Mar 3, 2026Updated 5 months ago
- Compares pangenome graphs by calculating the segmentation distance between two GFA (Graphical Fragment Assembly) files.☆15Apr 28, 2026Updated 3 months ago
- ☆50Jul 2, 2026Updated last month
- CLI tool for querying the Genome Taxonomy Database (GTDB). Batch search, genome cards, taxon lineages, and cross-release taxonomic compar…☆31Updated this week
- String algorithm visualizations☆14Feb 7, 2023Updated 3 years ago
- Creating alignment plots from bam files☆132Jul 28, 2026Updated last week