brianli314 / palindrome-finder
A bioinformatics tool written in Rust to find palindromic sequences in DNA
☆34Updated 3 weeks ago
Alternatives and similar repositories for palindrome-finder:
Users that are interested in palindrome-finder are comparing it to the libraries listed below
- Lightweight mosaic/somatic SV caller for long reads (WIP)☆29Updated 2 months ago
- process any file in tabular format. Fasta/fastq/GTF/GFF/VCF/SAM/BED☆22Updated last week
- Remove human reads from a sequencing run☆36Updated 4 months ago
- ☆41Updated 3 months ago
- ☆32Updated 2 years ago
- Long read aligner for cyclic and acyclic pangenome graphs☆36Updated last year
- Extracts subgraphs or components from a graph in GFA format☆23Updated 3 months ago
- A FASTA/FASTQ format parser library☆20Updated 11 months ago
- Wavefront alignment algorithm (WFA) in Golang☆30Updated 3 months ago
- ☆17Updated this week
- Correcting errors in noisy long reads using variation graphs☆51Updated 2 years ago
- PAF (pairwise alignment format) validator based on extended CIGAR strings☆14Updated 5 months ago
- Kmer Analysis of Pileups for Genotyping☆21Updated last week
- PGR-TK: Pangenome Research Tool Kit☆12Updated this week
- Implementation of ToL genome assembly workflows☆20Updated 2 weeks ago
- Software that separates very close sequences that have been collapsed during assembly. Uses only long reads.☆34Updated 2 months ago
- ☆14Updated 10 months ago
- Pangenome Sequence Naming: a backwards-compatible hack to simplify the identification of samples and haplotypes in pangenomes☆38Updated 4 months ago
- MEMO: MEM-based pangenome indexing for k-mer queries☆18Updated 8 months ago
- Genome size estimation from long read overlaps☆48Updated 2 months ago
- a lexicographically-based GTF/GFF sorter☆32Updated 6 months ago
- Find Unique genomic Regions☆29Updated last month
- Computational Pangenomics☆17Updated 2 years ago
- Fast long-read mapper and whole-genome aligner (accelerated version of minimap2)☆27Updated last month
- Population-scale detection of non-reference sequence variants using colored de Bruijn Graphs☆24Updated 9 months ago
- Improved structural variant discovery in accurate long reads using sample-specific strings (SFS)☆42Updated 4 months ago
- a python package for finding tandem repeats from genomic sequences☆14Updated 2 months ago
- Dividing heterogeneous long-read sequencing into groups with de Bruijn graphs☆19Updated 3 months ago
- Generate random test data for bioinformatics☆25Updated 8 months ago
- This is a library C/Python/CLI for working with TAF (.taf,.taf.gz) and MAF (.maf) alignment files☆25Updated 2 months ago