CompEpigen / figenoLinks
Tool for plotting sequencing data along genomic coordinates.
☆309Updated 2 months ago
Alternatives and similar repositories for figeno
Users that are interested in figeno are comparing it to the libraries listed below
Sorting:
- Download FASTQ files from SRA or ENA repositories.☆343Updated 2 months ago
- Reference-guided transcript discovery and quantification for long read RNA-Seq data☆217Updated 3 weeks ago
- Tool for the Quality Control of Long-Read Defined Transcriptomes☆237Updated this week
- Transcript discovery and quantification with long RNA reads (Nanopores and PacBio)☆180Updated last week
- Iso-Seq - Scalable De Novo Isoform Discovery from Single-Molecule PacBio Reads☆219Updated 2 months ago
- Full-Length Alternative Isoform analysis of RNA☆234Updated this week
- parallel fastq-dump wrapper☆297Updated 2 years ago
- Nextflow training material☆193Updated this week
- A collection of scripts and notes related to genomics and bioinformatics☆219Updated 3 weeks ago
- A package for including transposable elements in differential enrichment analysis of sequencing datasets.☆262Updated 7 months ago
- HiCExplorer is a powerful and easy to use set of tools to process, normalize and visualize Hi-C data.☆256Updated last month
- ☆274Updated 9 months ago
- Step-by-step analysis pipeline for RNA-seq data☆140Updated 2 years ago
- Methylation (Bisulfite-Sequencing) analysis pipeline using Bismark or bwa-meth + MethylDackel☆172Updated last week
- SUPPA: Fast quantification of splicing and differential splicing☆280Updated last year
- Pipeline to fetch metadata and raw FastQ files from public databases☆179Updated last month
- Discovering known and novel miRNAs from small RNA sequencing data☆154Updated last year
- RNA-seq workflow using STAR and DESeq2☆344Updated this week
- Download sequencing data and metadata from GSA, SRA, ENA, and DDBJ databases.☆211Updated last week
- Genome browser and variant annotation☆376Updated last month
- Easier download/extract of FASTA/Q read data and metadata from the ENA, NCBI, AWS or GCP.☆274Updated 3 weeks ago
- HTSeq is a Python library to facilitate processing and analysis of data from high-throughput sequencing (HTS) experiments.☆106Updated 3 months ago
- Web application to explore the Sequence Read Archive.☆217Updated last month
- ATAC-seq peak-calling and QC analysis pipeline☆210Updated 2 months ago
- tools for working with Bisulfite Sequencing data while preserving reads intrinsic dependencies☆167Updated 3 months ago
- Detecting sites of genomic enrichment☆193Updated 2 years ago
- Application for making ENCODE Blacklists☆320Updated 4 years ago
- Generate IGV style locus tracks from bigWig files in R☆168Updated 10 months ago
- This Snakemake pipeline implements the GATK best-practices workflow☆258Updated 2 years ago
- Miscellaneous collection of Python and R scripts for processing Iso-Seq data☆275Updated last year