bede / deaconLinks
Fast DNA search and [host] depletion using minimizers
☆97Updated last month
Alternatives and similar repositories for deacon
Users that are interested in deacon are comparing it to the libraries listed below
Sorting:
- A new high-resolution long-read metagenome assembler for even noisy reads☆120Updated last week
- Split k-mer analysis – version 2☆103Updated 2 weeks ago
- Genome size estimation from long read overlaps☆80Updated last month
- Strain resolver for metagenomics☆80Updated last year
- Remove human reads from a sequencing run☆47Updated last month
- Recombination-free trees☆63Updated 4 months ago
- Bifrost graph gene caller.☆98Updated last week
- Phylogenetic compression of extremely large genome collections [661k ↘𝟭𝟲𝗚𝗶𝗕 | BIGSIdata ↘𝟰𝟴𝗚𝗶𝗕 | AllTheBact'23 ↘𝟳𝟱𝗚𝗶𝗕]☆44Updated 9 months ago
- More scalable dereplication for metagenome assembled genomes☆75Updated last month
- ☆37Updated 2 weeks ago
- Strain-level haplotyping for metagenomes with short or long-reads.☆63Updated 9 months ago
- A Python implementation of the OrthoANI algorithm for nucleotide identity measurement.☆33Updated 6 months ago
- Detecting multi-genome synteny using minimizer graph mapping☆98Updated 2 weeks ago
- Graph-based assembly phasing☆90Updated 2 months ago
- Extremely fast and accurate Nanopore demultiplexing☆75Updated last week
- Indels are not ideal - quick test for interrupted ORFs in bacterial/microbial genomes☆54Updated 2 years ago
- reference-based long read assemblies of bacterial genomes☆51Updated 4 years ago
- a tool to filter sites in a FASTA-format whole-genome pseudo-alignment☆64Updated 7 months ago
- Eukaryotic genome annotation software.☆22Updated 2 months ago
- Nail is an Alignment Inference tooL☆55Updated 2 weeks ago
- Precise host read removal☆114Updated 4 months ago
- implicit pangenome graph☆86Updated last week
- Inferring bacterial recombination rates from large-scale sequencing datasets.☆41Updated 2 years ago
- tree visualization for tree + annotation data☆45Updated 7 months ago
- A surveillance-oriented tool to strengthen the linkage between pathogen genetic clusters and epidemiological data☆47Updated 3 months ago
- Efficient phylogenetic tree inference for massive taxonomic datasets☆140Updated 9 months ago
- Taxonomic classifier for sequencing reads (bulk and single-cell data, short and long read) using FM-index with run-block compressed BWT.☆83Updated 3 weeks ago
- Gene-flank analysis tool☆36Updated last year
- A tool for removing redundant genomes from a set of assemblies☆78Updated 4 months ago
- Creating alignment plots from bam files☆104Updated this week