Alternatives and similar repositories for sassy

Users that are interested in sassy are comparing it to the libraries listed below

• rust-seq / simd-minimizers
  A SIMD-accelerated library to compute random minimizers
  ☆34Updated last week
• AlgoLab / RecGraph
  Optimal sequence-to-graph alignment with recombinations
  ☆39Updated 5 months ago
• rchikhi / rust-alignbench
  Pairwise nucleotide alignment benchmark of Rust bindings
  ☆30Updated 2 years ago
• broadinstitute / poasta
  Fast and exact gap-affine partial order alignment
  ☆57Updated 2 months ago
• jguhlin / minimap2-rs
  Rust bindings to minimap2 library
  ☆105Updated last month
• COMBINE-lab / kmers
  A bit-packed k-mer representation (and relevant utilities) for rust
  ☆47Updated last year
• algbio / ggcat
  Compacted and colored de Bruijn graph construction and querying
  ☆92Updated last month
• moold / kseq-rs
  A FASTA/FASTQ format parser library
  ☆20Updated last year
• noamteyssier / paraseq
  A minimal copy fastq and fasta reader built for parallel support and paired end processing
  ☆40Updated last week
• bede / deacon
  Fast DNA search and [host] depletion using minimizers
  ☆97Updated last month
• noamteyssier / gia
  gia: Genomic Interval Arithmetic
  ☆65Updated last year
• luizirber / nthash
  ntHash implementation in Rust
  ☆36Updated last year
• pangenome / impg
  implicit pangenome graph
  ☆86Updated this week
• shenwei356 / wfa
  Wavefront alignment algorithm (WFA) in Golang
  ☆32Updated 5 months ago
• rust-seq / minimizer-iter
  Iterate over minimizers of a DNA sequence
  ☆31Updated last year
• RagnarGrootKoerkamp / minimizers
  Reference implementations of minimizer schemes to go with the mod-minimizers paper.
  ☆28Updated 8 months ago
• mrvollger / rustybam
  bioinformatics toolkit in rust
  ☆93Updated 3 months ago
• suchapalaver / krust
  Bioinformatics 101 tool for counting unique k-length substrings in DNA
  ☆33Updated 2 years ago
• bsaintjo / slow5-rs
  Low level bindings and wrapper for slow5lib, an alternative for ONT Nanopore sequencing FAST5 output
  ☆10Updated last year
• natir / biotest
  Generate random test data for bioinformatics
  ☆27Updated last year
• wdecoster / kyber
  ☆21Updated last year
• Daniel-Liu-c0deb0t / ANTISEQUENCE
  Rust library for processing sequencing reads.
  ☆25Updated last year
• imartayan / CBL
  A Rust library providing fully dynamic sets of k-mers with high locality
  ☆46Updated this week
• COMBINE-lab / piscem
  Rust wrapper for the next generation (still currently in C++)
  ☆29Updated 6 months ago
• chfi / waragraph
  ☆29Updated last year
• alignoth / alignoth
  Creating alignment plots from bam files
  ☆100Updated this week
• smarco / BiWFA-paper
  Bidirectional WFA (Paper)
  ☆48Updated last year
• brianli314 / palindrome-finder
  A bioinformatics tool written in Rust to find palindromic sequences in DNA
  ☆38Updated 4 months ago
• Baohua-Chen / GFFx
  A Rust-Based suite of utilities for ultra-fast genomic feature extraction
  ☆40Updated last month
• brentp / vcfexpress
  expressions on VCFs
  ☆89Updated 9 months ago