RagnarGrootKoerkamp / sassyLinks
Fast approximate string searching
☆77Updated last week
Alternatives and similar repositories for sassy
Users that are interested in sassy are comparing it to the libraries listed below
Sorting:
- A SIMD-accelerated library to compute random minimizers☆33Updated last month
- Rust bindings to minimap2 library☆101Updated 3 weeks ago
- Optimal sequence-to-graph alignment with recombinations☆38Updated 3 months ago
- Fast and exact gap-affine partial order alignment☆56Updated last week
- ☆28Updated last year
- Pairwise nucleotide alignment benchmark of Rust bindings☆30Updated 2 years ago
- Compacted and colored de Bruijn graph construction and querying☆84Updated 3 weeks ago
- A bit-packed k-mer representation (and relevant utilities) for rust☆48Updated last year
- Reference implementations of minimizer schemes to go with the mod-minimizers paper.☆27Updated 6 months ago
- A FASTA/FASTQ format parser library☆20Updated last year
- ntHash implementation in Rust☆36Updated last year
- Iterate over minimizers of a DNA sequence☆31Updated last year
- bioinformatics toolkit in rust☆93Updated last month
- implicit pangenome graph☆79Updated this week
- gia: Genomic Interval Arithmetic☆64Updated last year
- A bioinformatics tool written in Rust to find palindromic sequences in DNA☆35Updated 2 months ago
- Rust library for processing sequencing reads.☆25Updated last year
- Wavefront alignment algorithm (WFA) in Golang☆32Updated 3 months ago
- A "Navie" Implementation of the Wavefront Algorithm For Sequence Alignment with Gap-Affine Scoring☆14Updated 2 years ago
- Benchmarking pairwise aligners☆36Updated 9 months ago
- ⚡️ 🧬 Fulgor is a fast and space-efficient colored de Bruijn graph index.☆55Updated 2 weeks ago
- Fast DNA search and [host] depletion using minimizers☆88Updated last week
- A Rust library providing fully dynamic sets of k-mers with high locality☆46Updated last year
- ☆12Updated 3 years ago
- Creating alignment plots from bam files☆67Updated this week
- Bioinformatics 101 tool for counting unique k-length substrings in DNA☆32Updated 2 years ago
- ☆21Updated 10 months ago
- an API for intersections of genomic data☆73Updated this week
- Compute bottom-s sketches and s-buckets sketches, using simd-minimizers crate.☆20Updated last month
- Low level bindings and wrapper for slow5lib, an alternative for ONT Nanopore sequencing FAST5 output☆10Updated last year