Fast approximate string searching
☆126May 12, 2026Updated 2 weeks ago
Alternatives and similar repositories for sassy
Users that are interested in sassy are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Fast and Memory Efficient Genome Sketching via HyperLogLog, HyperMinHash and UltraLogLog☆20Jan 22, 2026Updated 4 months ago
- FMSI is a highly memory efficient exact k-mer set index based on masked superstrings and the masked Burrows-Wheeler transform☆24Nov 20, 2025Updated 6 months ago
- A minimal copy fastq and fasta reader built for parallel support and paired end processing☆42Updated this week
- A SIMD-accelerated library to compute random minimizers☆43Apr 6, 2026Updated last month
- Bitpacked sequence trait and implementation☆18Feb 27, 2026Updated 2 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Fast and exact gap-affine partial order alignment☆68Apr 25, 2026Updated last month
- Compacted and colored de Bruijn graph construction and querying☆96Updated this week
- Rust bindings to minimap2 library☆111May 3, 2026Updated 3 weeks ago
- Fast, Cache-Efficient, and Scalable Queries on Pangenomes☆41Mar 9, 2026Updated 2 months ago
- Compute bottom-s sketches and s-buckets sketches, using simd-minimizers crate.☆21Dec 3, 2025Updated 5 months ago
- Optimal distance lower bound k-mer sampling.☆12Jun 19, 2024Updated last year
- k-mers and the like☆22May 4, 2026Updated 3 weeks ago
- ntHash implementation in Rust☆36Jul 12, 2024Updated last year
- Fast and compact locality-preserving minimal perfect hashing for k-mer sets.☆44Nov 18, 2023Updated 2 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- String algorithm visualizations☆13Feb 7, 2023Updated 3 years ago
- 📖 🧬 SSHash is a compressed, associative, exact, and weighted dictionary for k-mers.☆100May 6, 2026Updated 2 weeks ago
- Wavefront alignment algorithm (WFA) in Golang☆32Jul 26, 2025Updated 10 months ago
- find likely coding segments in DNA using composition-normalised hexamer tables☆18Oct 18, 2024Updated last year
- Parallel Construction of Suffix Arrays in Rust☆26May 2, 2025Updated last year
- GFAffix identifies walk-preserving shared affixes in variation graphs and collapses them into a non-redundant graph structure.☆38May 4, 2026Updated 3 weeks ago
- Pairwise nucleotide alignment benchmark of Rust bindings☆31Jul 27, 2023Updated 2 years ago
- Rust implementation of probminhash, superminhash and hyperloglog sketching algorithms☆31Jan 22, 2026Updated 4 months ago
- An efficient CLI to extract sequences from the SRA☆122Mar 4, 2026Updated 2 months ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Rapidly extract reads from a FASTQ file based on taxonomic classification via Kraken2.☆13Jan 26, 2026Updated 4 months ago
- GBZ file format for pangenome graphs☆46Apr 18, 2026Updated last month
- Fast DNA search and [host] depletion using minimizers☆111Apr 14, 2026Updated last month
- R integration for edlib, a C/C++ library for pairwise sequence alignment using edit distance (Levenshtein distance).☆11Jul 20, 2025Updated 10 months ago
- Pairwise whole genome aligner☆237May 19, 2026Updated last week
- Explore genomes in the terminal. Light, blazing fast 🚀, vim-motion.☆474Apr 22, 2026Updated last month
- Mumemto: multi-MUM and MEM finding across pangenomes☆131Apr 17, 2026Updated last month
- A pairwise sequence aligner written in Rust☆153Updated this week
- A plant organellar Graphical Fragment Assembly toolkit☆16Sep 10, 2025Updated 8 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Next Index to Query Kmer Intersection☆17Feb 1, 2023Updated 3 years ago
- A high efficiency binary format for sequencing data☆102May 5, 2026Updated 3 weeks ago
- convert variation graph alignments to coverage maps over nodes☆27Jan 21, 2026Updated 4 months ago
- Shared k-mer content between two genomes☆19Jun 21, 2023Updated 2 years ago
- Rust bindings to the wavefront algorithm C implementation☆17Sep 20, 2022Updated 3 years ago
- Rust library for processing sequencing reads.☆25Sep 2, 2024Updated last year
- A small, auxiliary index to massively improve parallel fastq parsing☆32Mar 6, 2026Updated 2 months ago