Fast approximate string searching
☆123Apr 11, 2026Updated 3 weeks ago
Alternatives and similar repositories for sassy
Users that are interested in sassy are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Fast and Memory Efficient Genome Sketching via HyperLogLog, HyperMinHash and UltraLogLog☆20Jan 22, 2026Updated 3 months ago
- FMSI is a highly memory efficient exact k-mer set index based on masked superstrings and the masked Burrows-Wheeler transform☆24Nov 20, 2025Updated 5 months ago
- A minimal copy fastq and fasta reader built for parallel support and paired end processing☆42Apr 24, 2026Updated last week
- A SIMD-accelerated library to compute random minimizers☆42Apr 6, 2026Updated 3 weeks ago
- Bitpacked sequence trait and implementation☆18Feb 27, 2026Updated 2 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Fast and exact gap-affine partial order alignment☆68Apr 25, 2026Updated last week
- Compacted and colored de Bruijn graph construction and querying☆97Mar 6, 2026Updated 2 months ago
- Rust bindings to minimap2 library☆110Mar 30, 2026Updated last month
- Fast, Cache-Efficient, and Scalable Queries on Pangenomes☆41Mar 9, 2026Updated last month
- Compute bottom-s sketches and s-buckets sketches, using simd-minimizers crate.☆21Dec 3, 2025Updated 5 months ago
- Optimal distance lower bound k-mer sampling.☆12Jun 19, 2024Updated last year
- k-mers and the like☆22Apr 27, 2026Updated last week
- ntHash implementation in Rust☆36Jul 12, 2024Updated last year
- Fast and compact locality-preserving minimal perfect hashing for k-mer sets.☆44Nov 18, 2023Updated 2 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- String algorithm visualizations☆13Feb 7, 2023Updated 3 years ago
- 📖 🧬 SSHash is a compressed, associative, exact, and weighted dictionary for k-mers.☆98Updated this week
- Wavefront alignment algorithm (WFA) in Golang☆31Jul 26, 2025Updated 9 months ago
- find likely coding segments in DNA using composition-normalised hexamer tables☆18Oct 18, 2024Updated last year
- Parallel Construction of Suffix Arrays in Rust☆26May 2, 2025Updated last year
- GFAffix identifies walk-preserving shared affixes in variation graphs and collapses them into a non-redundant graph structure.☆37May 29, 2025Updated 11 months ago
- Pairwise nucleotide alignment benchmark of Rust bindings☆31Jul 27, 2023Updated 2 years ago
- Rust implementation of probminhash, superminhash and hyperloglog sketching algorithms☆31Jan 22, 2026Updated 3 months ago
- An efficient CLI to extract sequences from the SRA☆122Mar 4, 2026Updated 2 months ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Rapidly extract reads from a FASTQ file based on taxonomic classification via Kraken2.☆13Jan 26, 2026Updated 3 months ago
- GBZ file format for pangenome graphs☆46Apr 18, 2026Updated 2 weeks ago
- Fast DNA search and [host] depletion using minimizers☆110Apr 14, 2026Updated 3 weeks ago
- R integration for edlib, a C/C++ library for pairwise sequence alignment using edit distance (Levenshtein distance).☆11Jul 20, 2025Updated 9 months ago
- Pairwise whole genome aligner☆235Apr 25, 2026Updated last week
- Explore genomes in the terminal. Light, blazing fast 🚀, vim-motion.☆472Apr 22, 2026Updated 2 weeks ago
- Mumemto: multi-MUM and MEM finding across pangenomes☆130Apr 17, 2026Updated 2 weeks ago
- A pairwise sequence aligner written in Rust☆153Jan 27, 2026Updated 3 months ago
- A plant organellar Graphical Fragment Assembly toolkit☆16Sep 10, 2025Updated 7 months ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Next Index to Query Kmer Intersection☆17Feb 1, 2023Updated 3 years ago
- A high efficiency binary format for sequencing data☆101Feb 25, 2026Updated 2 months ago
- convert variation graph alignments to coverage maps over nodes☆26Jan 21, 2026Updated 3 months ago
- Shared k-mer content between two genomes☆19Jun 21, 2023Updated 2 years ago
- Rust bindings to the wavefront algorithm C implementation☆17Sep 20, 2022Updated 3 years ago
- Rust library for processing sequencing reads.☆25Sep 2, 2024Updated last year
- A small, auxiliary index to massively improve parallel fastq parsing☆32Mar 6, 2026Updated 2 months ago