Fast and Memory Efficient Genome Sketching via HyperLogLog, HyperMinHash, UltraLogLog and ExaLogLog
☆22Aug 19, 2026Updated last month
Alternatives and similar repositories for lash
Users that are interested in lash are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Fast sequence distance estimates☆34Aug 24, 2026Updated 3 weeks ago
- Optimal distance lower bound k-mer sampling.☆12Jun 19, 2024Updated 2 years ago
- Bitpacked sequence trait and implementation☆19Aug 19, 2026Updated last month
- Iterate over minimizers of a DNA sequence☆33Jul 12, 2024Updated 2 years ago
- A SIMD-accelerated library to compute random minimizers☆48Aug 26, 2026Updated 3 weeks ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- ☆18Jul 21, 2026Updated 2 months ago
- Parallel Construction of Suffix Arrays in Rust☆26Updated this week
- 2bit file format implementation in Rust☆16Mar 27, 2026Updated 5 months ago
- ☆27Jun 16, 2026Updated 3 months ago
- An extensible and performant aligner and read mapper☆105Sep 15, 2026Updated last week
- sunburst plots for taxonomy - working to update Krona☆48Sep 22, 2025Updated last year
- k-mers and the like☆23Aug 30, 2026Updated 3 weeks ago
- A Rust-Based suite of utilities for ultra-fast genomic feature extraction☆47Dec 18, 2025Updated 9 months ago
- BAM/SAM/CRAM/FASTA reader, pileup engine, BCF/BAM writing☆29Updated this week
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Compute bottom-s sketches and s-buckets sketches, using simd-minimizers crate.☆21Aug 26, 2026Updated 3 weeks ago
- Viral genome coverage evaluation for metagenomic diagnostics☆27Jul 9, 2026Updated 2 months ago
- Host depletion optimised for clinical metagenomic sequencing applications☆19Jul 9, 2026Updated 2 months ago
- A small, auxiliary index to massively improve parallel fastq parsing☆32Mar 6, 2026Updated 6 months ago
- Rust bindings to minimap2 library☆113Sep 14, 2026Updated last week
- A minimap2 implementation with binseq inputs☆18Dec 11, 2025Updated 9 months ago
- A minimal copy fastq and fasta reader built for parallel support and paired end processing☆50Updated this week
- Rust implementation of probminhash, superminhash and hyperloglog sketching algorithms☆31Jan 22, 2026Updated 8 months ago
- Rust library for processing sequencing reads.☆25Sep 2, 2024Updated 2 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Taxonomy classification of viral sequences / contigs☆13Jul 15, 2025Updated last year
- Tearing through FASTA/Q sequences☆39Jul 9, 2026Updated 2 months ago
- Reference implementations of minimizer schemes to go with the mod-minimizers paper.☆29Jul 12, 2026Updated 2 months ago
- A "Navie" Implementation of the Wavefront Algorithm For Sequence Alignment with Gap-Affine Scoring☆14May 29, 2026Updated 3 months ago
- Fast and exact gap-affine partial order alignment☆71Sep 16, 2026Updated last week
- ☆21Feb 15, 2025Updated last year
- ⚡️ 🧬 Fulgor is a fast and space-efficient colored de Bruijn graph index.☆60Updated this week
- Fast approximate string searching☆169Aug 11, 2026Updated last month
- Just another minhash implementation.☆13Sep 14, 2026Updated last week
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Single-cache-miss rank queries over size 2 and 4 alphabets. 2x faster than all other Rust crates.☆18Apr 1, 2026Updated 5 months ago
- ☆29Aug 15, 2026Updated last month
- ntHash implementation in Rust☆36Jul 12, 2024Updated 2 years ago
- kmer-counter based on kache-hash☆19Sep 15, 2026Updated last week
- Compacted and colored de Bruijn graph construction and querying☆101Updated this week
- fast, multithreaded sourmash operations: search, compare, and gather.☆26Sep 7, 2026Updated 2 weeks ago
- PanTax: Strain-level metagenomic profiling using pangenome graphs☆55Jun 10, 2026Updated 3 months ago