fulcrumgenomics / fqgrepLinks
Grep for FASTQ files
☆102Updated 7 months ago
Alternatives and similar repositories for fqgrep
Users that are interested in fqgrep are comparing it to the libraries listed below
Sorting:
- long read RNA-seq quantification☆92Updated this week
- Creating alignment plots from bam files☆67Updated this week
- This repository hosts a large collection of Nextflow snippets☆56Updated 9 months ago
- seqfu - Sequece Fastx Utilities☆122Updated last month
- Per-base per-nucleotide depth analysis☆140Updated last month
- An efficient CLI to extract sequences from the SRA☆115Updated 2 weeks ago
- expressions on VCFs☆86Updated 7 months ago
- Tools to annotate genomes using long read transcriptomics data☆45Updated 4 years ago
- Quickly calculate and visualize sequence coverage in alignment files☆100Updated 6 years ago
- Wally: Visualization of aligned sequencing reads and contigs☆120Updated last month
- A post sequencing QC tool for Oxford Nanopore sequencers☆103Updated 3 months ago
- an API for intersections of genomic data☆73Updated this week
- Params validation plugin for Nextflow pipelines☆48Updated last year
- GenMap - Fast and Exact Computation of Genome Mappability☆114Updated last year
- Fast FASTQ sample demultiplexing in Rust.☆66Updated last week
- Experimental features for Nextflow☆45Updated 2 months ago
- NGSNGS: Next generation simulator for next generation sequencing data☆54Updated 11 months ago
- Scallop is a reference-based transcriptome assembler for RNA-seq☆91Updated 4 years ago
- ☆46Updated last month
- A collection of scripts to assist in the retrieval of data from the ENA Browser☆89Updated 3 months ago
- Tips for Nextflow and cheatsheet for channel operation☆80Updated last year
- An R package for estimating poly(A)-tail lengths in Oxford Nanopore RNA and DNA reads.☆54Updated last year
- Plotting tools for nanopore methylation data☆94Updated 3 months ago
- RNA modifications detection from Nanopore dRNA-Seq data☆87Updated 2 months ago
- 🏔 coverage extraction from BAM/CRAM files, supporting targets 📊☆64Updated 3 weeks ago
- reference-free transcriptome assembly for short and long reads☆108Updated last year
- A versatile toolkit for k-mers with taxonomic information☆80Updated 2 months ago
- bioinformatics toolkit in rust☆93Updated last month
- A catalogue of available long read sequencing data analysis tools☆80Updated last month
- Functionality for working with pipeline and sample sheet schema files in Nextflow pipelines☆45Updated 3 weeks ago