fulcrumgenomics / fqgrep
Grep for FASTQ files
☆97Updated last month
Alternatives and similar repositories for fqgrep
Users that are interested in fqgrep are comparing it to the libraries listed below
Sorting:
- long read RNA-seq quantification☆83Updated last week
- Wally: Visualization of aligned sequencing reads and contigs☆115Updated 3 weeks ago
- A simple toolset for BED files (warning: CLI may change before bedtk becomes stable)☆140Updated 3 weeks ago
- ☆39Updated 3 weeks ago
- Tools to annotate genomes using long read transcriptomics data☆45Updated 4 years ago
- PGR-TK: Pangenome Research Tool Kit☆99Updated last year
- Fast and accurate coordinate conversion between assemblies☆112Updated last month
- Experimental features for Nextflow☆44Updated last month
- A collection of scripts to assist in the retrieval of data from the ENA Browser☆81Updated last year
- Quickly calculate and visualize sequence coverage in alignment files☆99Updated 5 years ago
- BigWig and BAM utilities☆96Updated last year
- igv.js standalone page generator and automatic configuration to view bam/cram/vcf/bed. "working in under 1 minute"☆126Updated last year
- Plotting tools for nanopore methylation data☆93Updated 11 months ago
- expressions on VCFs☆83Updated 3 weeks ago
- Fast FASTQ sample demultiplexing in Rust.☆62Updated last month
- Per-base per-nucleotide depth analysis☆127Updated 3 months ago
- Dynamic, adaptive sampling during nanopore sequencing☆32Updated this week
- reference-free transcriptome assembly for short and long reads☆103Updated last year
- Julia package powering VIVA, our tool for visualization of genomic variation data. Manual:☆86Updated last year
- Simple pileup-based variant caller☆89Updated 2 weeks ago
- Tools for plotting methylation data in various ways☆147Updated 3 weeks ago
- Genome annotation with PacBio Iso-Seq. Takes raw subreads as input, generate Full Length Non Chemiric (FLNC) sequences and produce a bed …☆40Updated 2 weeks ago
- A post sequencing QC tool for Oxford Nanopore sequencers☆96Updated last month
- Toolkit for calling structural variants using short or long reads☆102Updated this week
- Tips for Nextflow and cheatsheet for channel operation☆73Updated 9 months ago
- Dfam Transposable Element Tools Docker container.☆91Updated last week
- Read, manipulate and visualize 'Pairwise mApping Format' data in R☆74Updated 4 years ago
- SV caller for nanopore data☆91Updated 4 years ago
- Scallop is a reference-based transcriptome assembler for RNA-seq☆90Updated 4 years ago
- Tandem repeat expansion detection or genotyping from long-read alignments☆105Updated 3 months ago