Alternatives and similar repositories for fqgrep

Users that are interested in fqgrep are comparing it to the libraries listed below

• COMBINE-lab / oarfish
  long read RNA-seq quantification
  ☆90Updated 2 weeks ago
• sstadick / perbase
  Per-base per-nucleotide depth analysis
  ☆142Updated 2 weeks ago
• mribeirodantas / NextflowSnippets
  This repository hosts a large collection of Nextflow snippets
  ☆57Updated 8 months ago
• brentp / vcfexpress
  expressions on VCFs
  ☆85Updated 5 months ago
• alignoth / alignoth
  Creating alignment plots from bam files
  ☆65Updated last week
• nextflow-io / nf-validation
  Params validation plugin for Nextflow pipelines
  ☆48Updated last year
• quinlan-lab / bedder-rs
  an API for intersections of genomic data
  ☆75Updated last week
• tobiasrausch / wally
  Wally: Visualization of aligned sequencing reads and contigs
  ☆118Updated 5 months ago
• nanoporetech / pinfish
  Tools to annotate genomes using long read transcriptomics data
  ☆46Updated 4 years ago
• fbreitwieser / bamcov
  Quickly calculate and visualize sequence coverage in alignment files
  ☆100Updated 6 years ago
• bentsherman / nf-boost
  Experimental features for Nextflow
  ☆45Updated last month
• mrvollger / rustybam
  bioinformatics toolkit in rust
  ☆91Updated last week
• GenomiqueENS / toulligQC
  A post sequencing QC tool for Oxford Nanopore sequencers
  ☆103Updated 2 months ago
• telatin / seqfu2
  seqfu - Sequece Fastx Utilities
  ☆120Updated last week
• fulcrumgenomics / fqtk
  Fast FASTQ sample demultiplexing in Rust.
  ☆65Updated 4 months ago
• epi2me-labs / wf-basecalling
  ☆46Updated last week
• danrlu / nextflow_cheatsheet
  Tips for Nextflow and cheatsheet for channel operation
  ☆80Updated last year
• tleonardi / nanocompore
  RNA modifications detection from Nanopore dRNA-Seq data
  ☆87Updated 3 weeks ago
• cpockrandt / genmap
  GenMap - Fast and Exact Computation of Genome Mappability
  ☆113Updated last year
• GeneDx / pgr-tk
  ☆100Updated last year
• evotools / nf-LO
  A Nextflow workflow to generate lift over files for any pair of genomes
  ☆68Updated 3 months ago
• RAHenriksen / NGSNGS
  NGSNGS: Next generation simulator for next generation sequencing data
  ☆54Updated 10 months ago
• lh3 / minipileup
  Simple pileup-based variant caller
  ☆92Updated 5 months ago
• ArcInstitute / xsra
  An efficient CLI to extract sequences from the SRA
  ☆113Updated 2 months ago
• adnaniazi / tailfindr
  An R package for estimating poly(A)-tail lengths in Oxford Nanopore RNA and DNA reads.
  ☆54Updated 11 months ago
• shenwei356 / unikmer
  A versatile toolkit for k-mers with taxonomic information
  ☆79Updated last month
• dwinter / pafr
  Read, manipulate and visualize 'Pairwise mApping Format' data in R
  ☆74Updated 4 years ago
• mritchielab / long_read_tools
  A catalogue of available long read sequencing data analysis tools
  ☆78Updated 2 weeks ago
• yangao07 / longcallD
  A local-haplotagging-based small and structural variant caller
  ☆85Updated this week
• ChristopherWilks / megadepth
  BigWig and BAM utilities
  ☆97Updated last year