Alternatives and similar repositories for vcfexpress

Users that are interested in vcfexpress are comparing it to the libraries listed below

• alignoth / alignoth
  Creating alignment plots from bam files
  ☆65Updated this week
• quinlan-lab / bedder-rs
  an API for intersections of genomic data
  ☆75Updated this week
• fulcrumgenomics / fqgrep
  Grep for FASTQ files
  ☆99Updated 3 months ago
• COMBINE-lab / oarfish
  long read RNA-seq quantification
  ☆89Updated last month
• fulcrumgenomics / fqtk
  Fast FASTQ sample demultiplexing in Rust.
  ☆63Updated 2 months ago
• vembrane / vembrane
  vembrane filters VCF records using python expressions
  ☆61Updated this week
• telatin / bamtocov
  🏔 coverage extraction from BAM/CRAM files, supporting targets 📊  
  ☆64Updated last month
• noamteyssier / gia
  gia: Genomic Interval Arithmetic
  ☆65Updated 11 months ago
• ArcInstitute / xsra
  An efficient CLI to extract sequences from the SRA
  ☆111Updated last week
• cschin / peregrine-2021
  ☆59Updated last year
• vsbuffalo / granges
  A Rust library and command line tool for working with genomic ranges and their data.
  ☆101Updated last year
• yangao07 / longcallD
  A local-haplotagging-based small and structural variant caller
  ☆78Updated last week
• brentp / fraguracy
  overlapping bases in read-pairs from a fragment indicate accuracy and reveal error-prone sites
  ☆33Updated 2 months ago
• lh3 / ropebwt3
  BWT construction and search
  ☆117Updated 3 weeks ago
• TimD1 / vcfdist
  vcfdist: Accurately benchmarking phased variant calls
  ☆83Updated 2 weeks ago
• bluenote-1577 / flopp
  flopp is a software package for single individual haplotype phasing of polyploid organisms from long read sequencing.
  ☆38Updated last year
• nanoporegenomics / napu_wf
  WDL workflows for variant calling and assembly using ONT
  ☆35Updated last week
• wdecoster / kyber
  ☆21Updated 7 months ago
• shenwei356 / unikmer
  A versatile toolkit for k-mers with taxonomic information
  ☆80Updated last year
• Parsoa / SVDSS
  Improved structural variant discovery in accurate long reads using sample-specific strings (SFS)
  ☆43Updated last month
• jonas-fuchs / BAMdash
  create a interactive coverage plot dashboard from bam files and add gb, vcf and bed tracks
  ☆54Updated last month
• huangnengCSU / longcallR
  LongcallR is a SNP caller for single molecule long-read RNA-seq data
  ☆63Updated this week
• alejandrogzi / gtfsort
  a lexicographically-based GTF/GFF sorter
  ☆36Updated 3 months ago
• lh3 / panmask
  Easy genomic regions for short-read variant calling
  ☆32Updated 3 weeks ago
• mrvollger / rustybam
  bioinformatics toolkit in rust
  ☆90Updated 2 months ago
• GeneDx / pgr-tk
  PGR-TK: Pangenome Research Tool Kit
  ☆100Updated last year
• vicsanga / Postre
  POSTRE: Prediction Of STRuctural variant Effects
  ☆27Updated 5 months ago
• rhpvorderman / sequali
  Fast sequencing data quality metrics
  ☆27Updated 2 months ago
• pierrepeterlongo / back_to_sequences
  ☆42Updated 2 weeks ago
• PacificBiosciences / sawfish
  Joint structural variant and copy number variant caller for HiFi sequencing data
  ☆59Updated 2 weeks ago