brentp / vcfexpress
expressions on VCFs
☆51Updated last month
Related projects ⓘ
Alternatives and complementary repositories for vcfexpress
- Creating alignment plots from bam files☆56Updated last week
- Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata☆56Updated 2 years ago
- vembrane filters VCF records using python expressions☆57Updated last month
- SV analysis of the long-read sequencing data of the 1019 samples of the 1KG-ONT panel☆24Updated 6 months ago
- Set of tools to manipulate and visualize modified base bam files☆48Updated 2 years ago
- Automated Detection and Qualification of Differential Methylation☆11Updated 11 months ago
- implicit pangenome graph☆42Updated last week
- Symmetric DUST for finding low-complexity regions in DNA sequences☆33Updated last year
- Location of public benchmarking; primarily final results☆18Updated 2 years ago
- ⛰ covtobed | Convert the coverage track from a BAM file into a BED file☆43Updated 2 years ago
- WDL workflows for variant calling and assembly using ONT☆28Updated last month
- Improved structural variant discovery in accurate long reads using sample-specific strings (SFS)☆42Updated 3 weeks ago
- Population-wide Deletion Calling☆34Updated 2 months ago
- Tumour-only somatic mutation calling using long reads☆24Updated 2 weeks ago
- What is true, thank you, ernestly. A large variant benchmarking tool analogous to hap.py for small variants.☆29Updated last year
- ☆17Updated last year
- flopp is a software package for single individual haplotype phasing of polyploid organisms from long read sequencing.☆35Updated last year
- PGR-TK: Pangenome Research Tool Kit☆93Updated 6 months ago
- ☆29Updated 2 years ago
- ☆40Updated this week
- Structural variant benchmark of challenging medically relevant genes☆16Updated last year
- Experimental features for Nextflow☆31Updated last month
- Sample Contamination Estimate from VCF☆19Updated this week
- gia: Genomic Interval Arithmetic☆51Updated 2 months ago
- Pipeline for structural variant image curation and analysis.☆48Updated 2 years ago
- Generate random test data for bioinformatics☆25Updated 4 months ago
- Lightweight mosaic/somatic SV caller for long reads (WIP)☆27Updated this week
- vcfdist: Accurately benchmarking phased variant calls☆76Updated this week
- MethPhaser: methylation-based haplotype phasing of human genomes☆42Updated 3 months ago
- LongcallR is a small variant caller for single molecule long-read RNA-seq data☆41Updated last month