Alternatives and similar repositories for vcfexpress

Users that are interested in vcfexpress are comparing it to the libraries listed below

• alignoth / alignoth
  Creating alignment plots from bam files
  ☆65Updated last week
• vembrane / vembrane
  vembrane filters VCF records using python expressions
  ☆60Updated this week
• quinlan-lab / bedder-rs
  an API for intersections of genomic data
  ☆75Updated this week
• fulcrumgenomics / fqtk
  Fast FASTQ sample demultiplexing in Rust.
  ☆62Updated last month
• fulcrumgenomics / fqgrep
  Grep for FASTQ files
  ☆97Updated 2 months ago
• ArcInstitute / xsra
  An efficient CLI to extract sequences from the SRA
  ☆105Updated this week
• yangao07 / longcallD
  A local-haplotagging-based small and structural variant caller
  ☆78Updated last month
• vsbuffalo / granges
  A Rust library and command line tool for working with genomic ranges and their data.
  ☆101Updated last year
• bentsherman / nf-boost
  Experimental features for Nextflow
  ☆43Updated 3 months ago
• GeneDx / pgr-tk
  PGR-TK: Pangenome Research Tool Kit
  ☆100Updated last year
• nextflow-io / nf-validation
  Params validation plugin for Nextflow pipelines
  ☆48Updated 10 months ago
• nanoporegenomics / napu_wf
  WDL workflows for variant calling and assembly using ONT
  ☆35Updated 3 weeks ago
• huangnengCSU / longcallR
  LongcallR is a SNP caller for single molecule long-read RNA-seq data
  ☆62Updated 2 weeks ago
• evotools / nf-LO
  A Nextflow workflow to generate lift over files for any pair of genomes
  ☆67Updated last week
• srbehera / DRAGEN_Analysis
  ☆32Updated last year
• TimD1 / vcfdist
  vcfdist: Accurately benchmarking phased variant calls
  ☆80Updated this week
• wdecoster / kyber
  ☆21Updated 5 months ago
• PacificBiosciences / sawfish
  Joint structural variant and copy number variant caller for HiFi sequencing data
  ☆54Updated last week
• noamteyssier / gia
  gia: Genomic Interval Arithmetic
  ☆65Updated 10 months ago
• PacificBiosciences / HiPhase
  Small variant, structural variant, and short tandem repeat phasing tool for PacBio HiFi reads
  ☆74Updated 2 months ago
• jonas-fuchs / BAMdash
  create a interactive coverage plot dashboard from bam files and add gb, vcf and bed tracks
  ☆52Updated 2 weeks ago
• Kuanhao-Chao / LiftOn
  🚀 LiftOn: Accurate annotation mapping for GFF/GTF across assemblies
  ☆104Updated 4 months ago
• alejandrogzi / gtfsort
  a lexicographically-based GTF/GFF sorter
  ☆35Updated last month
• adnaniazi / tailfindr
  An R package for estimating poly(A)-tail lengths in Oxford Nanopore RNA and DNA reads.
  ☆53Updated 8 months ago
• COMBINE-lab / oarfish
  long read RNA-seq quantification
  ☆86Updated last week
• rrazaghi / modbamtools
  Set of tools to manipulate and visualize modified base bam files
  ☆56Updated 2 years ago
• shenwei356 / unikmer
  A versatile toolkit for k-mers with taxonomic information
  ☆78Updated 10 months ago
• nanoporetech / pinfish
  Tools to annotate genomes using long read transcriptomics data
  ☆45Updated 4 years ago
• epi2me-labs / modbam2bed
  ☆48Updated 10 months ago
• lh3 / minipileup
  Simple pileup-based variant caller
  ☆90Updated 2 months ago