brentp / vcfexpress
expressions on VCFs
☆78Updated last month
Alternatives and similar repositories for vcfexpress:
Users that are interested in vcfexpress are comparing it to the libraries listed below
- Creating alignment plots from bam files☆56Updated last week
- Fast FASTQ sample demultiplexing in Rust.☆60Updated last week
- an API for intersections of genomic data☆75Updated this week
- vembrane filters VCF records using python expressions☆58Updated last week
- A local-haplotagging-based small and structural variant caller☆31Updated this week
- A Rust library and command line tool for working with genomic ranges and their data.☆102Updated 9 months ago
- WDL workflows for variant calling and assembly using ONT☆33Updated this week
- Experimental features for Nextflow☆40Updated last week
- ☆21Updated 2 months ago
- A Nextflow workflow to generate lift over files for any pair of genomes☆64Updated last month
- vcfdist: Accurately benchmarking phased variant calls☆79Updated this week
- LongcallR is a small variant caller for single molecule long-read RNA-seq data☆49Updated 5 months ago
- PGR-TK: Pangenome Research Tool Kit☆98Updated 11 months ago
- overlapping bases in read-pairs from a fragment indicate accuracy and reveal error-prone sites☆33Updated last month
- create a interactive coverage plot dashboard from bam files and add gb, vcf and bed tracks☆43Updated 7 months ago
- Grep for FASTQ files☆96Updated last week
- Simple pileup-based variant caller☆87Updated last month
- Pipeline to evaluate and validate the accuracy of variant calling methods in genomic research☆26Updated this week
- perSVade: personalized Structural Variation detection☆38Updated last month
- ✂️ Deep learning-based splice site predictor that improves spliced alignments☆48Updated last month
- Small variant, structural variant, and short tandem repeat phasing tool for PacBio HiFi reads☆72Updated 6 months ago
- A versatile toolkit for k-mers with taxonomic information☆77Updated 7 months ago
- a lexicographically-based GTF/GFF sorter☆33Updated 7 months ago
- bedtools-like functionality for interval sets in rust☆50Updated 7 months ago
- Fast sequencing data quality metrics☆26Updated this week
- long read RNA-seq quantification☆78Updated 2 weeks ago
- Complex structural variant visualization for HiFi sequencing data☆26Updated last week
- A versatile pairwise aligner for genomic and spliced nucleotide sequences☆52Updated 9 months ago
- Set of tools to manipulate and visualize modified base bam files☆52Updated 2 years ago
- gia: Genomic Interval Arithmetic☆61Updated 7 months ago