brentp / vcfexpressLinks
expressions on VCFs
☆88Updated 8 months ago
Alternatives and similar repositories for vcfexpress
Users that are interested in vcfexpress are comparing it to the libraries listed below
Sorting:
- Creating alignment plots from bam files☆81Updated last week
- Fast FASTQ sample demultiplexing in Rust.☆66Updated last month
- long read RNA-seq quantification☆97Updated last month
- A versatile toolkit for k-mers with taxonomic information☆81Updated 4 months ago
- an API for intersections of genomic data☆139Updated 3 weeks ago
- gia: Genomic Interval Arithmetic☆65Updated last year
- Fast sequencing data quality metrics☆31Updated 3 months ago
- vembrane filters VCF records using python expressions☆68Updated 3 weeks ago
- ☆21Updated last year
- A local-haplotagging-based small and structural variant caller☆90Updated 2 weeks ago
- flopp is a software package for single individual haplotype phasing of polyploid organisms from long read sequencing.☆37Updated 2 years ago
- implicit pangenome graph☆86Updated this week
- Grep for FASTQ files☆103Updated 2 weeks ago
- 🏔 coverage extraction from BAM/CRAM files, supporting targets 📊☆65Updated last month
- bioinformatics toolkit in rust☆93Updated 3 months ago
- Small variant, structural variant, and short tandem repeat phasing tool for PacBio HiFi reads☆80Updated 9 months ago
- A Rust library and command line tool for working with genomic ranges and their data.☆101Updated last year
- overlapping bases in read-pairs from a fragment indicate accuracy and reveal error-prone sites☆33Updated 7 months ago
- ☆58Updated 2 years ago
- Identify long STRs, VNTRs, satellite DNA and other low-complexity regions in a genome☆84Updated last month
- BWT construction and search☆123Updated last week
- ⛰ covtobed | Convert the coverage track from a BAM file into a BED file☆44Updated 2 months ago
- vcfdist: Accurately benchmarking phased variant calls☆85Updated 3 months ago
- 🧬 High-performance VCF file parser and reformatter with VEP annotation support. Converts complex VCF files to analyzable TSV format …☆44Updated 4 months ago
- ☆101Updated last year
- BigSeqKit: a parallel Big Data toolkit to process FASTA and FASTQ files at scale☆56Updated 2 years ago
- a lexicographically-based GTF/GFF sorter☆37Updated 8 months ago
- bedtools-like functionality for interval sets in rust☆55Updated 5 months ago
- create a interactive coverage plot dashboard from bam files and add gb, vcf and bed tracks☆57Updated 3 weeks ago
- Joint structural variant and copy number variant caller for HiFi sequencing data☆66Updated 2 months ago