Alternatives and similar repositories for vcfexpress:

Users that are interested in vcfexpress are comparing it to the libraries listed below

• alignoth / alignoth
  Creating alignment plots from bam files
  ☆56Updated this week
• vembrane / vembrane
  vembrane filters VCF records using python expressions
  ☆57Updated 3 months ago
• GeneDx / pgr-tk
  PGR-TK: Pangenome Research Tool Kit
  ☆96Updated 8 months ago
• quinlan-lab / bedder-rs
  an API for intersections of genomic data
  ☆74Updated this week
• fulcrumgenomics / fqtk
  Fast FASTQ sample demultiplexing in Rust.
  ☆58Updated last month
• sirselim / guppy_parameter_optimiser
  A small bash script that automates sweeping Guppy parameters in an attempt to optimise basecalling rate
  ☆31Updated 2 years ago
• Parsoa / SVDSS
  Improved structural variant discovery in accurate long reads using sample-specific strings (SFS)
  ☆42Updated 2 months ago
• pangenome / impg
  implicit pangenome graph
  ☆51Updated this week
• bwa-mem2 / mm2-fast
  A versatile pairwise aligner for genomic and spliced nucleotide sequences
  ☆51Updated 7 months ago
• shenwei356 / unikmer
  A versatile toolkit for k-mers with taxonomic information
  ☆76Updated 5 months ago
• wdecoster / kyber
  ☆19Updated 2 weeks ago
• lh3 / minipileup
  Simple pileup-based variant caller
  ☆85Updated 9 months ago
• mourisl / centrifuger
  Classifier for metagenomic sequences using FM-index with run-block compressed BWT.
  ☆52Updated 2 weeks ago
• lh3 / sdust
  Symmetric DUST for finding low-complexity regions in DNA sequences
  ☆34Updated last year
• fulcrumgenomics / fqgrep
  Grep for FASTQ files
  ☆94Updated last month
• brentp / fraguracy
  overlapping bases in read-pairs from a fragment indicate accuracy and reveal error-prone sites
  ☆32Updated last week
• oma219 / spumoni
  Pan-Genomic Matching Statistics
  ☆48Updated 9 months ago
• kage-genotyper / kage
  Alignment-free genotyper for SNPs and short indels, implemented in Python.
  ☆48Updated 3 months ago
• bluenote-1577 / flopp
  flopp is a software package for single individual haplotype phasing of polyploid organisms from long read sequencing.
  ☆37Updated last year
• brwnj / covviz
  Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata
  ☆56Updated 2 years ago
• kamimrcht / REINDEER
  REINDEER REad Index for abuNDancE quERy
  ☆57Updated 5 months ago
• bentsherman / nf-boost
  Experimental features for Nextflow
  ☆36Updated this week
• tobiasrausch / wally
  Wally: Visualization of aligned sequencing reads and contigs
  ☆110Updated 3 weeks ago
• noamteyssier / gia
  gia: Genomic Interval Arithmetic
  ☆58Updated 4 months ago
• TimD1 / vcfdist
  vcfdist: Accurately benchmarking phased variant calls
  ☆79Updated this week
• evotools / nf-LO
  A Nextflow workflow to generate lift over files for any pair of genomes
  ☆56Updated last month
• Kuanhao-Chao / LiftOn
  🚀 LiftOn: Accurate annotation mapping for GFF/GTF across assemblies
  ☆70Updated last month
• nextflow-io / nf-validation
  Params validation plugin for Nextflow pipelines
  ☆48Updated 5 months ago
• huangnengCSU / longcallR
  LongcallR is a small variant caller for single molecule long-read RNA-seq data
  ☆42Updated 3 months ago
• vsbuffalo / granges
  A Rust library and command line tool for working with genomic ranges and their data.
  ☆101Updated 7 months ago