Alternatives and similar repositories for ggcat

Users that are interested in ggcat are comparing it to the libraries listed below

• broadinstitute / poasta
  Fast and exact gap-affine partial order alignment
  ☆54Updated last week
• jermp / fulgor
  ⚡️ 🧬 Fulgor is a fast and space-efficient colored de Bruijn graph index.
  ☆52Updated last week
• bede / deacon
  FASTX search and [host] depletion using minimizers
  ☆84Updated 2 weeks ago
• AlgoLab / RecGraph
  Optimal sequence-to-graph alignment with recombinations
  ☆36Updated last month
• rchikhi / rust-alignbench
  Pairwise nucleotide alignment benchmark of Rust bindings
  ☆30Updated 2 years ago
• rust-seq / simd-minimizers
  A SIMD-accelerated library to compute random minimizers
  ☆33Updated this week
• jean-pierreBoth / gsearch
  Approximate nearest neighbour search for microbial genomes based on hash metric
  ☆55Updated last week
• pangenome / impg
  implicit pangenome graph
  ☆69Updated last week
• ksahlin / strobemers
  A repository for generating strobemers and evalaution
  ☆78Updated last year
• algbio / themisto
  Space-efficient pseudoalignment with a colored de Bruijn graph
  ☆52Updated 6 months ago
• rust-seq / minimizer-iter
  Iterate over minimizers of a DNA sequence
  ☆31Updated last year
• mrvollger / rustybam
  bioinformatics toolkit in rust
  ☆90Updated 3 months ago
• maickrau / MBG
  ☆62Updated last week
• HudsonAlpha / fmlrc2
  ☆47Updated 2 years ago
• imartayan / CBL
  A Rust library providing fully dynamic sets of k-mers with high locality
  ☆45Updated 11 months ago
• smarco / BiWFA-paper
  Bidirectional WFA (Paper)
  ☆47Updated last year
• luizirber / nthash
  ntHash implementation in Rust
  ☆36Updated last year
• COMBINE-lab / kmers
  A bit-packed k-mer representation (and relevant utilities) for rust
  ☆47Updated last year
• qwx9 / strangepg
  strange cross-platform, performance-oriented and interactive pangenome and large graph visualization
  ☆41Updated this week
• RagnarGrootKoerkamp / minimizers
  Reference implementations of minimizer schemes to go with the mod-minimizers paper.
  ☆25Updated 4 months ago
• lh3 / ropebwt3
  BWT construction and search
  ☆119Updated 2 months ago
• lh3 / miniwfa
  A reimplementation of the WaveFront Alignment algorithm at low memory
  ☆49Updated last year
• tlemane / kmtricks
  modular k-mer count matrix and Bloom filter construction for large read collections
  ☆84Updated 3 weeks ago
• suchapalaver / krust
  Bioinformatics 101 tool for counting unique k-length substrings in DNA
  ☆31Updated last year
• pairwise-alignment / pa-bench
  Benchmarking pairwise aligners
  ☆36Updated 7 months ago
• COMBINE-lab / cuttlefish
  Building the compacted de Bruijn graph efficiently from references or reads.
  ☆89Updated 4 months ago
• chfi / rs-gfa
  GFA parser in Rust
  ☆30Updated 2 years ago
• chfi / gfaestus
  GFA visualizer, GPU-accelerated using Vulkan
  ☆72Updated 3 years ago
• alignoth / alignoth
  Creating alignment plots from bam files
  ☆65Updated last week
• bacpop / ska.rust
  Split k-mer analysis – version 2
  ☆92Updated last month