algbio / ggcat
Compacted and colored de Bruijn graph construction and querying
☆82Updated last week
Alternatives and similar repositories for ggcat:
Users that are interested in ggcat are comparing it to the libraries listed below
- Fast and exact gap-affine partial order alignment☆49Updated 2 weeks ago
- Bidirectional WFA (Paper)☆46Updated 11 months ago
- Fulgor is a fast and space-efficient colored de Bruijn graph index.☆49Updated last week
- A reimplementation of the WaveFront Alignment algorithm at low memory☆49Updated 11 months ago
- implicit pangenome graph☆58Updated this week
- A bit-packed k-mer representation (and relevant utilities) for rust☆48Updated 9 months ago
- Split k-mer analysis – version 2☆82Updated 2 months ago
- Detecting multi-genome synteny using minimizer graph mapping☆76Updated 3 months ago
- A Rust library providing fully dynamic sets of k-mers with high locality☆45Updated 6 months ago
- Space-efficient pseudoalignment with a colored de Bruijn graph☆53Updated last month
- Mumemto: multi-MUM and MEM finding across pangenomes☆79Updated 2 weeks ago
- Pan-Genomic Matching Statistics☆52Updated last year
- Panacus is a tool for computing statistics for GFA-formatted pangenome graphs☆100Updated last month
- A repository for generating strobemers and evalaution☆78Updated last year
- bioinformatics toolkit in rust☆88Updated last week
- modular k-mer count matrix and Bloom filter construction for large read collections☆83Updated 6 months ago
- PGR-TK: Pangenome Research Tool Kit☆99Updated last year
- Creating alignment plots from bam files☆57Updated this week
- ☆17Updated last year
- Index kmtricks bf matrices☆43Updated 4 months ago
- GFAffix identifies walk-preserving shared affixes in variation graphs and collapses them into a non-redundant graph structure.☆36Updated last month
- Approximate nearest neighbour search for microbial genomes based on hash metric☆55Updated last week
- Classifier for metagenomic sequences using FM-index with run-block compressed BWT.☆56Updated last month
- Structural variant discovery and genotyping from mapped PacBio HiFi data☆48Updated last week
- ☆114Updated 3 weeks ago
- Assembled Genomes Compressor☆161Updated 5 months ago
- Banded Striped DNA Sequence Alignment☆45Updated last year
- A C++ library and utilities for manipulating the Graphical Fragment Assembly format.☆54Updated 2 years ago
- Building the compacted de Bruijn graph efficiently from references or reads.☆86Updated last week
- Benchmarking pairwise aligners☆36Updated 2 months ago