Daniel-Liu-c0deb0t / ANTISEQUENCELinks
Rust library for processing sequencing reads.
☆25Updated 11 months ago
Alternatives and similar repositories for ANTISEQUENCE
Users that are interested in ANTISEQUENCE are comparing it to the libraries listed below
Sorting:
- A Rust library providing fully dynamic sets of k-mers with high locality☆45Updated 10 months ago
- Pairwise nucleotide alignment benchmark of Rust bindings☆31Updated 2 years ago
- A FASTA/FASTQ format parser library☆20Updated last year
- Iterate over minimizers of a DNA sequence☆31Updated last year
- Reference implementations of minimizer schemes to go with the mod-minimizers paper.☆25Updated 3 months ago
- Benchmarking pairwise aligners☆36Updated 6 months ago
- GBWT in Rust☆43Updated 4 months ago
- Host depletion optimised for clinical metagenomic sequencing applications☆16Updated 8 months ago
- Wavefront alignment algorithm (WFA) in Golang☆30Updated last week
- ☆13Updated 2 weeks ago
- Shared k-mer content between two genomes☆18Updated 2 years ago
- Fast and exact gap-affine partial order alignment☆53Updated 2 weeks ago
- Optimal sequence-to-graph alignment with recombinations☆36Updated 2 weeks ago
- A SIMD-accelerated library to compute random minimizers☆33Updated 2 weeks ago
- A bit-packed k-mer representation (and relevant utilities) for rust☆48Updated last year
- Python language bindings for bwa☆10Updated last month
- A "Navie" Implementation of the Wavefront Algorithm For Sequence Alignment with Gap-Affine Scoring☆15Updated 2 years ago
- A rust wrapper for the spoa C++ partial order alignment library☆10Updated last month
- ☆17Updated 6 months ago
- A bioinformatics tool written in Rust to find palindromic sequences in DNA☆35Updated 6 months ago
- ntHash implementation in Rust☆36Updated last year
- Rust crate with bindings and interface to the SPOA library for generating consensus sequences.☆12Updated 6 years ago
- Iterate k-min-mers from a DNA sequence in Rust☆13Updated last year
- Optimal distance lower bound k-mer sampling.☆12Updated last year
- Singular Genomics Demultiplexing Tool☆16Updated last year
- Compute bottom-s sketches and s-buckets sketches, using simd-minimizers crate.☆18Updated last month
- Generate random test data for bioinformatics☆26Updated last year
- A Go implementation of the strobemers (https://github.com/ksahlin/strobemers)☆15Updated 4 years ago
- k-mers and the like☆22Updated this week
- A minimal copy fastq and fasta reader built for parallel support and paired end processing☆21Updated last week