Daniel-Liu-c0deb0t / ANTISEQUENCELinks
Rust library for processing sequencing reads.
☆25Updated 9 months ago
Alternatives and similar repositories for ANTISEQUENCE
Users that are interested in ANTISEQUENCE are comparing it to the libraries listed below
Sorting:
- Reference implementations of minimizer schemes to go with the mod-minimizers paper.☆25Updated 2 months ago
- A FASTA/FASTQ format parser library☆20Updated last year
- Iterate over minimizers of a DNA sequence☆30Updated 11 months ago
- Fast and exact gap-affine partial order alignment☆51Updated 2 weeks ago
- A Rust library providing fully dynamic sets of k-mers with high locality☆45Updated 8 months ago
- Shared k-mer content between two genomes☆18Updated 2 years ago
- Wavefront alignment algorithm (WFA) in Golang☆29Updated 7 months ago
- Benchmarking pairwise aligners☆36Updated 4 months ago
- GBWT in Rust☆43Updated 2 months ago
- A bit-packed k-mer representation (and relevant utilities) for rust☆48Updated last year
- VEP-like tool for sequence ontology and HGVS annotation of VCF files☆20Updated this week
- Iterate k-min-mers from a DNA sequence in Rust☆13Updated last year
- Generate random test data for bioinformatics☆26Updated last year
- A bioinformatics tool written in Rust to find palindromic sequences in DNA☆35Updated 4 months ago
- A rust wrapper for the spoa C++ partial order alignment library☆10Updated 2 weeks ago
- A long read simulator based on badread idea☆22Updated 2 years ago
- a toolset for fast DNA read set matching and assembly using a new type of reduced kmer☆37Updated 3 years ago
- A SIMD-accelerated library to compute random minimizers☆29Updated last week
- Pairwise nucleotide alignment benchmark of Rust bindings☆31Updated last year
- Optimal sequence-to-graph alignment with recombinations☆32Updated 4 months ago
- Long read aligner for cyclic and acyclic pangenome graphs☆37Updated last year
- A "Navie" Implementation of the Wavefront Algorithm For Sequence Alignment with Gap-Affine Scoring☆15Updated last year
- ☆14Updated 4 years ago
- Rust wrapper for the next generation (still currently in C++)☆26Updated 3 weeks ago
- Dividing heterogeneous long-read sequencing into groups with de Bruijn graphs☆25Updated 7 months ago
- Host depletion optimised for clinical metagenomic sequencing applications☆16Updated 7 months ago
- Wrapper over rust-htslib for building collections of BAM records for testing.☆11Updated last year
- k-mers and the like☆22Updated last week
- A lightweight library for working with PAF (Pairwise mApping Format) files☆31Updated 3 years ago
- Bioinformatics 101 tool for counting unique k-length substrings in DNA☆31Updated last year