Daniel-Liu-c0deb0t / ANTISEQUENCELinks
Rust library for processing sequencing reads.
☆25Updated last year
Alternatives and similar repositories for ANTISEQUENCE
Users that are interested in ANTISEQUENCE are comparing it to the libraries listed below
Sorting:
- A Rust library providing fully dynamic sets of k-mers with high locality☆46Updated last year
- A FASTA/FASTQ format parser library☆20Updated last year
- Reference implementations of minimizer schemes to go with the mod-minimizers paper.☆27Updated 8 months ago
- Pairwise nucleotide alignment benchmark of Rust bindings☆30Updated 2 years ago
- Host depletion optimised for clinical metagenomic sequencing applications☆16Updated last year
- A rust wrapper for the spoa C++ partial order alignment library☆10Updated 6 months ago
- Wavefront alignment algorithm (WFA) in Golang☆32Updated 5 months ago
- Iterate over minimizers of a DNA sequence☆31Updated last year
- A minimal copy fastq and fasta reader built for parallel support and paired end processing☆39Updated 2 weeks ago
- Benchmarking pairwise aligners☆36Updated 10 months ago
- Fast and exact gap-affine partial order alignment☆57Updated last month
- Shared k-mer content between two genomes☆18Updated 2 years ago
- A SIMD-accelerated library to compute random minimizers☆33Updated last month
- ☆13Updated last month
- A bit-packed k-mer representation (and relevant utilities) for rust☆47Updated last year
- Python language bindings for bwa☆11Updated last month
- A "Navie" Implementation of the Wavefront Algorithm For Sequence Alignment with Gap-Affine Scoring☆14Updated 2 years ago
- Optimal distance lower bound k-mer sampling.☆12Updated last year
- convert reads from repeated measures of same piece of DNA into spaced matricies for deep learners.☆14Updated 2 years ago
- GBWT in Rust☆43Updated this week
- A bioinformatics tool written in Rust to find palindromic sequences in DNA☆38Updated 4 months ago
- k-mers and the like☆22Updated 2 weeks ago
- Rust wrapper for the next generation (still currently in C++)☆29Updated 5 months ago
- ntHash implementation in Rust☆36Updated last year
- Iterate k-min-mers from a DNA sequence in Rust☆13Updated last year
- Singular Genomics Demultiplexing Tool☆16Updated last year
- Just another minhash implementation.☆12Updated 4 months ago
- Optimal sequence-to-graph alignment with recombinations☆39Updated 5 months ago
- Fast sequence distance estimates☆24Updated last week
- Next Index to Query Kmer Intersection☆17Updated 2 years ago