Rust library for processing sequencing reads.
☆25Sep 2, 2024Updated 2 years ago
Alternatives and similar repositories for ANTISEQUENCE
Users that are interested in ANTISEQUENCE are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Optimal distance lower bound k-mer sampling.☆12Jun 19, 2024Updated 2 years ago
- Fast and exact gap-affine partial order alignment☆71Sep 16, 2026Updated last month
- BAM/SAM/CRAM/FASTA reader, pileup engine, BCF/BAM writing☆29Oct 9, 2026Updated last week
- Parallel Construction of Suffix Arrays in Rust☆26Oct 9, 2026Updated last week
- ☆22Jul 28, 2022Updated 4 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- A rust wrapper for the spoa C++ partial order alignment library☆10Jun 11, 2025Updated last year
- Shared k-mer content between two genomes☆19Jun 21, 2023Updated 3 years ago
- ☆27Jun 16, 2026Updated 4 months ago
- GBZ file format for pangenome graphs☆46Sep 14, 2026Updated last month
- Fast and Memory Efficient Genome Sketching via HyperLogLog, HyperMinHash, UltraLogLog and ExaLogLog☆23Updated this week
- plane sweep filtering genome alignments☆24Sep 28, 2026Updated 2 weeks ago
- A Rust library for storing generic genomic data by sorted chromosome name☆18Sep 26, 2024Updated 2 years ago
- Pairwise nucleotide alignment benchmark of Rust bindings☆32Jul 27, 2023Updated 3 years ago
- ☆21Dec 26, 2025Updated 9 months ago
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- Reference implementations of minimizer schemes to go with the mod-minimizers paper.☆29Jul 12, 2026Updated 3 months ago
- Refinements of the WFA alignment algorithm with better complexity☆26Mar 31, 2022Updated 4 years ago
- ☆14Jan 31, 2020Updated 6 years ago
- Just another minhash implementation.☆13Sep 14, 2026Updated last month
- SIMD-accelerated library for computing global and X-drop affine gap penalty sequence-to-sequence or sequence-to-profile alignments using …☆141Jun 23, 2024Updated 2 years ago
- ntHash implementation in Rust☆36Jul 12, 2024Updated 2 years ago
- A Rust library providing fully dynamic sets of k-mers with high locality☆47May 13, 2026Updated 5 months ago
- String algorithm visualizations☆14Feb 7, 2023Updated 3 years ago
- Rust bindings to minimap2 library☆114Sep 14, 2026Updated last month
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Rust bindings to the wavefront algorithm C implementation☆17Sep 20, 2022Updated 4 years ago
- Fast and compact locality-preserving minimal perfect hashing for k-mer sets.☆44Nov 18, 2023Updated 2 years ago
- Rust implementation of probminhash, superminhash and hyperloglog sketching algorithms☆31Jan 22, 2026Updated 8 months ago
- Python package for comparing genome assemblies and read data to the diploid Q100 benchmark☆21Oct 8, 2026Updated last week
- A minimap2 implementation with binseq inputs☆18Dec 11, 2025Updated 10 months ago
- your friendly pangenome graph genotyper☆10Feb 6, 2023Updated 3 years ago
- Singular Genomics Demultiplexing Tool☆16Mar 5, 2024Updated 2 years ago
- ☆14Dec 26, 2025Updated 9 months ago
- gia: Genomic Interval Arithmetic☆69Aug 21, 2024Updated 2 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- A minimal copy fastq and fasta reader built for parallel support and paired end processing☆50Sep 30, 2026Updated 2 weeks ago
- De Bruijn graph construction for large k.☆17Aug 31, 2021Updated 5 years ago
- find likely coding segments in DNA using composition-normalised hexamer tables☆18Oct 18, 2024Updated last year
- Compacted and colored de Bruijn graph construction and querying☆100Updated this week
- ☆20Aug 18, 2020Updated 6 years ago
- A wrapper to Heng Li's kseq/readfq, an efficient FastQ/Fasta parser☆15Jun 28, 2023Updated 3 years ago
- Iterate k-min-mers from a DNA sequence in Rust☆13Apr 8, 2024Updated 2 years ago