kcleal / superintervalsLinks
Fast interval intersection library
☆43Updated last week
Alternatives and similar repositories for superintervals
Users that are interested in superintervals are comparing it to the libraries listed below
Sorting:
- ☆22Updated 8 months ago
- Python language bindings for bwa☆10Updated last month
- A Rust library for storing generic genomic data by sorted chromosome name☆17Updated 11 months ago
- A minimal copy fastq and fasta reader built for parallel support and paired end processing☆22Updated this week
- bedtools-like functionality for interval sets in rust☆53Updated 3 weeks ago
- VEP-like tool for sequence ontology and HGVS annotation of VCF files☆21Updated this week
- gia: Genomic Interval Arithmetic☆65Updated last year
- Tools for working FASTQ files from sequencers (R1/R2/I1/I2)☆13Updated 8 months ago
- Bam Read Index - Extract alignments from a bam file by readname☆27Updated last year
- Fast and flexible tool for reading, modifying and writing biological sequences☆18Updated last month
- Rust wrapper for the next generation (still currently in C++)☆28Updated last month
- A bit-packed k-mer representation (and relevant utilities) for rust☆48Updated last year
- Catalogue of pairwise alignment algorithms and benchmarks☆26Updated last year
- A (very) fast program for getting statistics about a fastq file, the way I need them, written in Rust☆32Updated 7 months ago
- ☆14Updated 3 weeks ago
- Contains the description of a file format to store kmers and associated values☆33Updated 3 years ago
- overlapping bases in read-pairs from a fragment indicate accuracy and reveal error-prone sites☆33Updated 2 months ago
- ☆14Updated 4 years ago
- ☆15Updated last year
- A bioinformatics tool written in Rust to find palindromic sequences in DNA☆35Updated this week
- drunk on perbase pileups and lua expressions☆19Updated 3 months ago
- A minimap2 implementation with binseq inputs☆16Updated last month
- Hierarchical binned indexed data store for on-disk genomic data.☆14Updated 7 months ago
- A FASTA/FASTQ format parser library☆20Updated last year
- A k-mer search engine for all Sequence Read Archive public accessions☆31Updated 10 months ago
- A Rust library providing fully dynamic sets of k-mers with high locality☆45Updated 11 months ago
- multi_tbx: a simple tool for indexing VCF files and extract variant records for variant data stored in multiple VCF files.☆10Updated 3 years ago
- Genotype Representation Graph Library☆35Updated this week
- The python binding for D4 format☆16Updated 3 years ago
- Fast sequencing data quality metrics☆27Updated 3 months ago