Alternatives and similar repositories for superintervals

Users that are interested in superintervals are comparing it to the libraries listed below

• varfish-org / mehari
  VEP-like tool for sequence ontology and HGVS annotation of VCF files
  ☆21Updated this week
• nh13 / fqme
  ☆21Updated 9 months ago
• noamteyssier / bedrs
  bedtools-like functionality for interval sets in rust
  ☆53Updated last month
• 10XGenomics / fastq_set
  Tools for working FASTQ files from sequencers (R1/R2/I1/I2)
  ☆12Updated 9 months ago
• noamteyssier / gia
  gia: Genomic Interval Arithmetic
  ☆64Updated last year
• vsbuffalo / genomap
  A Rust library for storing generic genomic data by sorted chromosome name
  ☆17Updated 11 months ago
• COMBINE-lab / piscem
  Rust wrapper for the next generation (still currently in C++)
  ☆28Updated 2 months ago
• jts / bri
  Bam Read Index - Extract alignments from a bam file by readname
  ☆27Updated last year
• fulcrumgenomics / pybwa
  Python language bindings for bwa
  ☆10Updated 2 months ago
• jdidion / pairwise-alignment
  Catalogue of pairwise alignment algorithms and benchmarks
  ☆24Updated last year
• brentp / fraguracy
  overlapping bases in read-pairs from a fragment indicate accuracy and reveal error-prone sites
  ☆33Updated 3 months ago
• natir / vcf2parquet
  Convert vcf in parquet
  ☆27Updated 7 months ago
• angelovangel / faster
  A (very) fast program for getting statistics about a fastq file, the way I need them, written in Rust
  ☆31Updated 8 months ago
• COMBINE-lab / pufferfish2
  ☆15Updated last year
• markschl / seqtool
  Fast and flexible tool for reading, modifying and writing biological sequences
  ☆17Updated 2 months ago
• noamteyssier / paraseq
  A minimal copy fastq and fasta reader built for parallel support and paired end processing
  ☆30Updated 2 weeks ago
• brentp / pbr
  drunk on perbase pileups and lua expressions
  ☆19Updated 4 months ago
• aprilweilab / grgl
  Genotype Representation Graph Library
  ☆37Updated this week
• COMBINE-lab / kmers
  A bit-packed k-mer representation (and relevant utilities) for rust
  ☆47Updated last year
• ArcInstitute / mmr
  A minimap2 implementation with binseq inputs
  ☆16Updated last month
• lh3 / pre-pe
  Preprocessing paired-end reads produced with experiment-specific protocols
  ☆32Updated 7 years ago
• annalam / seqkit
  Toolkit for manipulating FASTA and SAM files
  ☆19Updated last year
• COMBINE-lab / piscem-infer
  ☆14Updated last month
• stjude-rust-labs / chainfile
  A crate for working with genomics chain files.
  ☆11Updated last month
• 10XGenomics / scan-rs
  Single-cell analysis methods in Rust
  ☆26Updated 3 months ago
• vsbuffalo / hgindex
  Hierarchical binned indexed data store for on-disk genomic data.
  ☆14Updated 8 months ago
• sstadick / bam-builder
  Wrapper over rust-htslib for building collections of BAM records for testing.
  ☆10Updated last year
• telatin / covtobed
  ⛰ covtobed | Convert the coverage track from a BAM file into a BED file
  ☆44Updated 3 months ago
• marbl / T2T-Browser
  Genome browser hub for the T2T genomes and resources
  ☆23Updated last week
• brianli314 / palindrome-finder
  A bioinformatics tool written in Rust to find palindromic sequences in DNA
  ☆35Updated 3 weeks ago