kcleal / superintervals
Fast interval intersection library
☆35Updated 3 weeks ago
Alternatives and similar repositories for superintervals:
Users that are interested in superintervals are comparing it to the libraries listed below
- ☆22Updated 3 months ago
- bedtools-like functionality for interval sets in rust☆51Updated 7 months ago
- gia: Genomic Interval Arithmetic☆61Updated 7 months ago
- VEP-like tool for sequence ontology and HGVS annotation of VCF files☆19Updated this week
- overlapping bases in read-pairs from a fragment indicate accuracy and reveal error-prone sites☆33Updated last month
- Tools for working FASTQ files from sequencers (R1/R2/I1/I2)☆13Updated 3 months ago
- Hierarchical binned indexed data store for on-disk genomic data.☆14Updated 2 months ago
- Rust wrapper for the next generation (still currently in C++)☆24Updated 2 months ago
- ProSolo, variant calling from single cell DNA-seq data, or: bulk backing vocals for single cell solos.☆22Updated 3 years ago
- A Rust library for storing generic genomic data by sorted chromosome name☆17Updated 6 months ago
- Container class to represent genomic locations and support genomic analysis☆20Updated last week
- Given a set of kmers (fasta format) and a set of sequences (fasta format), this tool will extract the sequences containing the kmers.☆21Updated last year
- Wrapper over rust-htslib for building collections of BAM records for testing.☆11Updated last year
- Fast sequencing data quality metrics☆26Updated last week
- a lexicographically-based GTF/GFF sorter☆32Updated 7 months ago
- Catalogue of pairwise alignment algorithms and benchmarks☆25Updated 7 months ago
- multi_tbx: a simple tool for indexing VCF files and extract variant records for variant data stored in multiple VCF files.☆10Updated 3 years ago
- Build an index for your BAM Index (BAI)☆17Updated 9 years ago
- drunk on perbase pileups and lua expressions☆17Updated last year
- add true-negative SVs from a population callset to a truth-set.☆15Updated 2 years ago
- ☆14Updated 2 years ago
- The python binding for D4 format☆16Updated 3 years ago
- Samwell: a python package for using genomic files... well☆20Updated 2 years ago
- Variant call adjudication☆16Updated 9 months ago
- ☆21Updated 2 months ago
- Pipeline to produce consensus reads using unique molecular indexes/barcodes (UMIs)☆21Updated last week
- Rust binding for WFA2-lib☆10Updated 2 years ago
- Hidden Markov Model based Copy number caller☆20Updated 5 months ago
- Iterate over minimizers of a DNA sequence☆28Updated 8 months ago
- Generate random test data for bioinformatics☆26Updated 9 months ago