kcleal / superintervalsLinks
Fast interval intersection library
☆44Updated 5 months ago
Alternatives and similar repositories for superintervals
Users that are interested in superintervals are comparing it to the libraries listed below
Sorting:
- ☆21Updated 3 weeks ago
- A Rust library for storing generic genomic data by sorted chromosome name☆17Updated last year
- VEP-like tool for sequence ontology and HGVS annotation of VCF files☆24Updated this week
- gia: Genomic Interval Arithmetic☆66Updated last year
- A minimal copy fastq and fasta reader built for parallel support and paired end processing☆40Updated 2 weeks ago
- Rust wrapper for the next generation (still currently in C++)☆29Updated 6 months ago
- Tools for working FASTQ files from sequencers (R1/R2/I1/I2)☆12Updated last year
- Python language bindings for bwa☆12Updated 2 months ago
- Catalogue of pairwise alignment algorithms and benchmarks☆24Updated 2 weeks ago
- bedtools-like functionality for interval sets in rust☆55Updated 5 months ago
- Bam Read Index - Extract alignments from a bam file by readname☆28Updated last year
- Contains the description of a file format to store kmers and associated values☆34Updated 3 years ago
- overlapping bases in read-pairs from a fragment indicate accuracy and reveal error-prone sites☆34Updated 7 months ago
- A FASTA/FASTQ format parser library☆20Updated last year
- Hierarchical binned indexed data store for on-disk genomic data.☆13Updated last year
- A (very) fast program for getting statistics about a fastq file, the way I need them, written in Rust☆32Updated 2 months ago
- A minimap2 implementation with binseq inputs☆17Updated last month
- Fast and flexible tool for reading, modifying and writing biological sequences☆17Updated 3 months ago
- A Rust library providing fully dynamic sets of k-mers with high locality☆46Updated last week
- Wrapper over rust-htslib for building collections of BAM records for testing.☆10Updated last month
- Singular Genomics Demultiplexing Tool☆16Updated last year
- ☆14Updated 5 months ago
- drunk on perbase pileups and lua expressions☆19Updated 2 months ago
- Tools to gather evidence for structural variation via breakpoint detection.☆19Updated last month
- Genotype Representation Graph Library☆37Updated this week
- A bioinformatics tool written in Rust to find palindromic sequences in DNA☆38Updated 4 months ago
- a lexicographically-based GTF/GFF sorter☆37Updated 8 months ago
- multi_tbx: a simple tool for indexing VCF files and extract variant records for variant data stored in multiple VCF files.☆10Updated 4 years ago
- Command line tools for IntSpan related bioinformatics operations☆12Updated 9 months ago
- A bit-packed k-mer representation (and relevant utilities) for rust☆47Updated last year