kcleal / superintervalsLinks
Fast interval intersection library
☆43Updated last month
Alternatives and similar repositories for superintervals
Users that are interested in superintervals are comparing it to the libraries listed below
Sorting:
- Rust wrapper for the next generation (still currently in C++)☆28Updated 2 months ago
- ☆21Updated 10 months ago
- A Rust library for storing generic genomic data by sorted chromosome name☆17Updated last year
- VEP-like tool for sequence ontology and HGVS annotation of VCF files☆20Updated this week
- bedtools-like functionality for interval sets in rust☆53Updated 2 months ago
- Tools for working FASTQ files from sequencers (R1/R2/I1/I2)☆12Updated 10 months ago
- gia: Genomic Interval Arithmetic☆64Updated last year
- Python language bindings for bwa☆11Updated 2 weeks ago
- ☆15Updated last year
- A minimal copy fastq and fasta reader built for parallel support and paired end processing☆31Updated last week
- Bam Read Index - Extract alignments from a bam file by readname☆27Updated last year
- ☆14Updated 2 months ago
- A bit-packed k-mer representation (and relevant utilities) for rust☆47Updated last year
- Fast and flexible tool for reading, modifying and writing biological sequences☆17Updated this week
- overlapping bases in read-pairs from a fragment indicate accuracy and reveal error-prone sites☆33Updated 4 months ago
- A bioinformatics tool written in Rust to find palindromic sequences in DNA☆35Updated last month
- A FASTA/FASTQ format parser library☆20Updated last year
- Snakemake pipeline for benchmarking read mappers☆16Updated last year
- Contains the description of a file format to store kmers and associated values☆33Updated 3 years ago
- Fast sequencing data quality metrics☆28Updated last month
- Wrapper over rust-htslib for building collections of BAM records for testing.☆10Updated 2 years ago
- process any file in tabular format. Fasta/fastq/GTF/GFF/VCF/SAM/BED☆21Updated last month
- drunk on perbase pileups and lua expressions☆19Updated 4 months ago
- Catalogue of pairwise alignment algorithms and benchmarks☆24Updated last year
- A (very) fast program for getting statistics about a fastq file, the way I need them, written in Rust☆31Updated 8 months ago
- A Rust library providing fully dynamic sets of k-mers with high locality☆46Updated last year
- Genotype Representation Graph Library☆37Updated 2 weeks ago
- A minimap2 implementation with binseq inputs☆16Updated 2 months ago
- a lexicographically-based GTF/GFF sorter☆36Updated 5 months ago
- Single-cell analysis methods in Rust☆27Updated 3 months ago