zeeev / whamLinks
Structural variant detection and association testing
☆108Updated 2 years ago
Alternatives and similar repositories for wham
Users that are interested in wham are comparing it to the libraries listed below
Sorting:
- Filtering and profiling of next-generational sequencing data using region-specific rules☆79Updated 2 years ago
- don't get DUP'ed or DEL'ed by your putative SVs.☆107Updated 5 years ago
- Long read aligner☆115Updated 2 years ago
- Tools for the analysis of structural variation in genomes☆81Updated last year
- Runs a combination of tools to generate structural variant calls on whole-genome sequencing data☆103Updated 5 years ago
- Toolkit for calling structural variants using short or long reads☆115Updated 3 weeks ago
- LoFreq Star: Sensitive variant calling from sequencing data☆108Updated 2 months ago
- SV caller for nanopore data☆92Updated 5 years ago
- Same species annotation lift over pipeline.☆98Updated 2 years ago
- GenMap - Fast and Exact Computation of Genome Mappability☆113Updated last year
- A EXPERIMENTAL fork of minimap2 optimized for assembly-to-reference alignment☆87Updated 4 years ago
- ☆91Updated 3 years ago
- Read visualizer for structural variants☆84Updated 7 years ago
- Structural Variant Index☆75Updated last year
- Robust detection of clinically relevant structural and copy number variation from whole genome sequencing data☆75Updated last year
- A tool for profiling long STRs from short reads☆104Updated 4 years ago
- Data from the Human PanGenomics Project☆61Updated 4 years ago
- Wally: Visualization of aligned sequencing reads and contigs☆120Updated 3 months ago
- A snakemake pipeline for SV analysis from nanopore genome sequencing☆52Updated 5 years ago
- Reference-based variant calling pipeline for a pair of phased haplotype assemblies☆105Updated 4 years ago
- De novo genome assembly and multisample variant calling☆112Updated 6 years ago
- Tools for working with second gen assemblies, fasta sequences, etc☆93Updated 9 years ago
- NextGenMap is a flexible highly sensitive short read mapping tool that handles much higher mismatch rates than comparable algorithms whil…☆88Updated 6 years ago
- FALCON-Phase integrates PacBio long-read assemblies with Phase Genomics Hi-C data to create phased, diploid, chromosome-scale scaffolds☆74Updated 5 years ago
- Data and information about the Polaris study☆55Updated 6 years ago
- RetroSeq is a bioinformatics tool that searches for mobile element insertions from aligned reads in a BAM file and a library of reference…☆67Updated 3 years ago
- ABRA2☆95Updated 3 years ago
- BAM Statistics, Feature Counting and Annotation☆152Updated last month
- Lima - Demultiplex Barcoded PacBio Samples☆67Updated 8 months ago
- MetaSV: An accurate and integrative structural-variant caller for next generation sequencing☆59Updated 8 years ago