zeeev / whamLinks
Structural variant detection and association testing
☆108Updated 3 years ago
Alternatives and similar repositories for wham
Users that are interested in wham are comparing it to the libraries listed below
Sorting:
- don't get DUP'ed or DEL'ed by your putative SVs.☆107Updated 5 years ago
- Runs a combination of tools to generate structural variant calls on whole-genome sequencing data☆103Updated 5 years ago
- Filtering and profiling of next-generational sequencing data using region-specific rules☆79Updated 2 years ago
- Long read aligner☆114Updated 2 years ago
- C++ htslib/bwa-mem/fermi interface for interrogating sequence data☆138Updated 4 months ago
- ☆92Updated 4 years ago
- Read visualizer for structural variants☆84Updated 7 years ago
- Toolkit for calling structural variants using short or long reads☆115Updated last week
- ABRA2☆95Updated 3 years ago
- Tools for the analysis of structural variation in genomes☆81Updated last year
- SV caller for nanopore data☆92Updated 5 years ago
- Structural Variant Index☆75Updated last year
- Graph realignment tools for structural variants☆165Updated 3 years ago
- A program to detect denovo-variants using next-generation sequencing data.☆55Updated 5 years ago
- Same species annotation lift over pipeline.☆97Updated 2 years ago
- A simple toolset for BED files (warning: CLI may change before bedtk becomes stable)☆143Updated 5 months ago
- BAM Statistics, Feature Counting and Annotation☆151Updated 2 weeks ago
- Bayesian genotyper for structural variants☆136Updated 4 years ago
- A tool for profiling long STRs from short reads☆104Updated 4 years ago
- Robust detection of clinically relevant structural and copy number variation from whole genome sequencing data☆75Updated last year
- Data from the Human PanGenomics Project☆61Updated 4 years ago
- Tools for working with second gen assemblies, fasta sequences, etc☆95Updated 9 years ago
- De novo genome assembly and multisample variant calling☆112Updated 6 years ago
- Lima - Demultiplex Barcoded PacBio Samples☆68Updated 9 months ago
- GenMap - Fast and Exact Computation of Genome Mappability☆114Updated last year
- A suite of tools for detecting expansions of short tandem repeats☆85Updated 2 years ago
- NextGenMap is a flexible highly sensitive short read mapping tool that handles much higher mismatch rates than comparable algorithms whil…☆88Updated 6 years ago
- High-performance error correction for Illumina resequencing data☆74Updated 9 years ago
- Pipeline for annotating genomes using long read transcriptomics data with pinfish☆28Updated 5 years ago
- LoFreq Star: Sensitive variant calling from sequencing data☆110Updated 3 months ago