zeeev / whamLinks
Structural variant detection and association testing
☆109Updated 2 years ago
Alternatives and similar repositories for wham
Users that are interested in wham are comparing it to the libraries listed below
Sorting:
- don't get DUP'ed or DEL'ed by your putative SVs.☆107Updated 4 years ago
- Filtering and profiling of next-generational sequencing data using region-specific rules☆79Updated 2 years ago
- Toolkit for calling structural variants using short or long reads☆111Updated 2 months ago
- Runs a combination of tools to generate structural variant calls on whole-genome sequencing data☆103Updated 5 years ago
- Tools for the analysis of structural variation in genomes☆81Updated last year
- Bayesian genotyper for structural variants☆136Updated 4 years ago
- SV caller for nanopore data☆92Updated 5 years ago
- VerifyBamID2: A robust tool for DNA contamination estimation from sequence reads using ancestry-agnostic method.☆99Updated last year
- Data and information about the Polaris study☆54Updated 6 years ago
- Long read aligner☆115Updated 2 years ago
- FALCON-Phase integrates PacBio long-read assemblies with Phase Genomics Hi-C data to create phased, diploid, chromosome-scale scaffolds☆74Updated 5 years ago
- Same species annotation lift over pipeline.☆98Updated 2 years ago
- Bioinformatics tools for dealing with Multiple Alignment Format (MAF) files.☆109Updated 3 years ago
- Public Benchmark of Long-Read Structural Variant Caller on PacBio CCS HG002 Data☆51Updated 4 years ago
- RetroSeq is a bioinformatics tool that searches for mobile element insertions from aligned reads in a BAM file and a library of reference…☆67Updated 3 years ago
- BAM Statistics, Feature Counting and Annotation☆151Updated last week
- Read visualizer for structural variants☆84Updated 7 years ago
- De novo genome assembly and multisample variant calling☆112Updated 6 years ago
- Wally: Visualization of aligned sequencing reads and contigs☆120Updated last month
- Structural Variant Index☆75Updated 11 months ago
- Robust detection of clinically relevant structural and copy number variation from whole genome sequencing data☆75Updated last year
- GenMap - Fast and Exact Computation of Genome Mappability☆113Updated last year
- Tools for working with second gen assemblies, fasta sequences, etc☆93Updated 9 years ago
- scripts to parse IrysView output☆39Updated 10 years ago
- ABRA2☆95Updated 2 years ago
- A suite of tools for detecting expansions of short tandem repeats☆83Updated 2 years ago
- Visualization and annotation of CNVs from population-scale whole-genome sequencing data☆72Updated 7 years ago
- ☆91Updated 3 years ago
- LoFreq Star: Sensitive variant calling from sequencing data☆108Updated last month
- A tool for profiling long STRs from short reads☆102Updated 4 years ago