zeeev / whamLinks
Structural variant detection and association testing
☆108Updated 2 years ago
Alternatives and similar repositories for wham
Users that are interested in wham are comparing it to the libraries listed below
Sorting:
- Runs a combination of tools to generate structural variant calls on whole-genome sequencing data☆103Updated 4 years ago
- don't get DUP'ed or DEL'ed by your putative SVs.☆106Updated 4 years ago
- ☆91Updated 3 years ago
- Filtering and profiling of next-generational sequencing data using region-specific rules☆79Updated 2 years ago
- BAM Statistics, Feature Counting and Annotation☆150Updated last week
- SV caller for nanopore data☆92Updated 5 years ago
- Long read aligner☆115Updated 2 years ago
- A tool to identify, orient, trim and rescue full length cDNA reads☆83Updated 3 years ago
- Toolkit for calling structural variants using short or long reads☆109Updated last month
- GenMap - Fast and Exact Computation of Genome Mappability☆113Updated last year
- Tools for the analysis of structural variation in genomes☆81Updated last year
- Same species annotation lift over pipeline.☆98Updated 2 years ago
- Wally: Visualization of aligned sequencing reads and contigs☆120Updated 3 weeks ago
- Bayesian genotyper for structural variants☆136Updated 4 years ago
- pbsv - PacBio structural variant (SV) calling and analysis tools☆160Updated 8 months ago
- ABRA2☆93Updated 2 years ago
- A tool for profiling long STRs from short reads☆101Updated 4 years ago
- Data and information about the Polaris study☆54Updated 5 years ago
- LoFreq Star: Sensitive variant calling from sequencing data☆108Updated 2 weeks ago
- A suite of tools for detecting expansions of short tandem repeats☆83Updated 2 years ago
- Lima - Demultiplex Barcoded PacBio Samples☆67Updated 5 months ago
- De novo genome assembly and multisample variant calling☆112Updated 6 years ago
- Read visualizer for structural variants☆84Updated 7 years ago
- A collection of command line tools for working with sequencing data☆52Updated last month
- Tools for working with second gen assemblies, fasta sequences, etc☆93Updated 9 years ago
- Graph realignment tools for structural variants☆163Updated 2 years ago
- Robust detection of clinically relevant structural and copy number variation from whole genome sequencing data☆74Updated last year
- Structural Variant Index☆75Updated 10 months ago
- VerifyBamID2: A robust tool for DNA contamination estimation from sequence reads using ancestry-agnostic method.☆99Updated last year
- Tool for stripping adaptors and/or merging paired reads with overlap into single reads.☆145Updated 9 years ago