zeeev / wham
Structural variant detection and association testing
☆105Updated 2 years ago
Alternatives and similar repositories for wham:
Users that are interested in wham are comparing it to the libraries listed below
- Runs a combination of tools to generate structural variant calls on whole-genome sequencing data☆101Updated 4 years ago
- Bayesian genotyper for structural variants☆128Updated 3 years ago
- don't get DUP'ed or DEL'ed by your putative SVs.☆104Updated 4 years ago
- A simple toolset for BED files (warning: CLI may change before bedtk becomes stable)☆137Updated 9 months ago
- Long read aligner☆115Updated last year
- VerifyBamID2: A robust tool for DNA contamination estimation from sequence reads using ancestry-agnostic method.☆96Updated 9 months ago
- Graph realignment tools for structural variants☆156Updated 2 years ago
- Tools for processing and analyzing structural variants.☆150Updated 2 years ago
- pbsv - PacBio structural variant (SV) calling and analysis tools☆135Updated last week
- GenMap - Fast and Exact Computation of Genome Mappability☆104Updated 8 months ago
- Toolkit for calling structural variants using short or long reads☆100Updated last week
- Jasmine: SV Merging Across Samples☆206Updated 2 months ago
- Wally: Visualization of aligned sequencing reads and contigs☆111Updated 2 months ago
- De novo genome assembly and multisample variant calling☆112Updated 5 years ago
- Robust detection of clinically relevant structural and copy number variation from whole genome sequencing data☆67Updated 6 months ago
- A tool for somatic structural variant calling using long reads☆116Updated 2 weeks ago
- Correct mismatches, microindels, and noncanonical splice junctions in long reads that have been mapped to the genome☆68Updated last year
- MetaSV: An accurate and integrative structural-variant caller for next generation sequencing☆55Updated 7 years ago
- Data from the Human PanGenomics Project☆60Updated 3 years ago
- Filtering and profiling of next-generational sequencing data using region-specific rules☆75Updated last year
- RetroSeq is a bioinformatics tool that searches for mobile element insertions from aligned reads in a BAM file and a library of reference…☆65Updated 2 years ago
- Phased assembly variant caller☆110Updated 3 months ago
- SV caller for nanopore data☆91Updated 4 years ago
- Meta-pipeline to identify transposable element insertions using next generation sequencing data☆96Updated last year
- Tools for the analysis of structural variation in genomes☆78Updated 11 months ago
- A tool for profiling long STRs from short reads☆95Updated 3 years ago
- Pangenome-based genome inference☆123Updated this week
- Comparison of multiple long read datasets☆123Updated 2 months ago
- Same species annotation lift over pipeline.☆96Updated last year
- R package designed to simplify structural variant analysis☆72Updated 3 years ago