zeeev / whamLinks
Structural variant detection and association testing
☆108Updated 2 years ago
Alternatives and similar repositories for wham
Users that are interested in wham are comparing it to the libraries listed below
Sorting:
- don't get DUP'ed or DEL'ed by your putative SVs.☆107Updated 5 years ago
- Runs a combination of tools to generate structural variant calls on whole-genome sequencing data☆103Updated 5 years ago
- Filtering and profiling of next-generational sequencing data using region-specific rules☆79Updated 2 years ago
- An illumina paired-end and mate-pair short read simulator. This project attempts to model as many of the quirks that exist in Illumina da…☆67Updated 11 years ago
- Long read aligner☆115Updated 2 years ago
- Platypus Variant Caller☆108Updated last year
- RetroSeq is a bioinformatics tool that searches for mobile element insertions from aligned reads in a BAM file and a library of reference…☆67Updated 3 years ago
- Toolkit for calling structural variants using short or long reads☆115Updated last week
- Data from the Human PanGenomics Project☆61Updated 4 years ago
- Tools for the analysis of structural variation in genomes☆81Updated last year
- C++ htslib/bwa-mem/fermi interface for interrogating sequence data☆138Updated 3 months ago
- Same species annotation lift over pipeline.☆98Updated 2 years ago
- Structural Variant Index☆75Updated last year
- ☆91Updated 3 years ago
- SV caller for nanopore data☆92Updated 5 years ago
- GenMap - Fast and Exact Computation of Genome Mappability☆113Updated last year
- BAM Statistics, Feature Counting and Annotation☆152Updated 2 weeks ago
- De novo assembly based variant calling pipeline for Illumina short reads☆110Updated 5 years ago
- VerifyBamID2: A robust tool for DNA contamination estimation from sequence reads using ancestry-agnostic method.☆99Updated last year
- scripts to parse IrysView output☆39Updated 10 years ago
- LoFreq Star: Sensitive variant calling from sequencing data☆108Updated 2 months ago
- A tool for profiling long STRs from short reads☆103Updated 4 years ago
- Wally: Visualization of aligned sequencing reads and contigs☆120Updated 2 months ago
- Bioinformatics tools for dealing with Multiple Alignment Format (MAF) files.☆109Updated 3 years ago
- De novo genome assembly and multisample variant calling☆112Updated 6 years ago
- AdapterRemoval v2 - rapid adapter trimming, identification, and read merging☆113Updated 2 weeks ago
- MetaSV: An accurate and integrative structural-variant caller for next generation sequencing☆59Updated 8 years ago
- Bayesian genotyper for structural variants☆136Updated 4 years ago
- ABRA2☆95Updated 3 years ago
- NextGenMap is a flexible highly sensitive short read mapping tool that handles much higher mismatch rates than comparable algorithms whil…☆88Updated 6 years ago