Structural variant detection and association testing
☆108Feb 2, 2023Updated 3 years ago
Alternatives and similar repositories for wham
Users that are interested in wham are comparing it to the libraries listed below
Sorting:
- heuristics to merge structural variant calls in VCF format.☆38Oct 6, 2016Updated 9 years ago
- De-novo Assembly Structural Variant Caller☆13Sep 15, 2016Updated 9 years ago
- lumpy: a general probabilistic framework for structural variant discovery☆339Feb 22, 2026Updated last month
- Bayesian genotyper for structural variants☆136Mar 6, 2021Updated 5 years ago
- MetaSV: An accurate and integrative structural-variant caller for next generation sequencing☆59Jun 30, 2017Updated 8 years ago
- Graph realignment tools for structural variants☆166Dec 8, 2022Updated 3 years ago
- Read visualizer for structural variants☆84Aug 18, 2018Updated 7 years ago
- A software for discovery, genotyping and characterization of structural variants☆22Sep 11, 2024Updated last year
- Hemang Parikh☆11Jan 12, 2016Updated 10 years ago
- Structural variant merging tool☆57Aug 23, 2024Updated last year
- Structural variation and indel detection by local assembly☆254Updated this week
- don't get DUP'ed or DEL'ed by your putative SVs.☆107Dec 14, 2020Updated 5 years ago
- laSV is a software package that employs local assembly to detect structural variations from whole-genome high-throughput sequencing datas…☆12Sep 26, 2016Updated 9 years ago
- Toolset for SV simulation, comparison and filtering☆413Dec 1, 2023Updated 2 years ago
- Tools for processing and analyzing structural variants.☆157May 2, 2022Updated 3 years ago
- DELLY2: Structural variant discovery by integrated paired-end and split-read analysis☆507Feb 26, 2026Updated 3 weeks ago
- GRIDSS: the Genomic Rearrangement IDentification Software Suite☆281May 21, 2025Updated 10 months ago
- ☆51Aug 27, 2019Updated 6 years ago
- Approach to identify simple and complex structural genomic rearrangements using a randomized approach☆21Nov 14, 2018Updated 7 years ago
- VarSim: A high-fidelity simulation validation framework for high-throughput genome sequencing with cancer applications☆93Oct 3, 2024Updated last year
- ☆35Mar 2, 2021Updated 5 years ago
- Genotype and phase short tandem repeats using Illumina whole-genome sequencing data☆101Feb 27, 2023Updated 3 years ago
- Pipeline for structural variant image curation and analysis.☆49Dec 5, 2021Updated 4 years ago
- De novo assembly based variant calling pipeline for Illumina short reads☆110Nov 30, 2020Updated 5 years ago
- Runs a combination of tools to generate structural variant calls on whole-genome sequencing data☆103Nov 5, 2020Updated 5 years ago
- Structural Variant Prediction Viewer☆35Jul 19, 2017Updated 8 years ago
- ☆12Sep 11, 2025Updated 6 months ago
- NGMLR is a long-read mapper designed to align PacBio or Oxford Nanopore (standard and ultra-long) to a reference genome with a focus on r…☆308Mar 18, 2024Updated 2 years ago
- Plot structural variant signals from many BAMs and CRAMs☆560Jul 13, 2024Updated last year
- structural variant calling and genotyping with existing tools, but, smoothly.☆264Jun 17, 2024Updated last year
- reference free variant assembly☆34Jul 14, 2023Updated 2 years ago
- Visualisation and prioritisation of genomic variants from human exome sequencing projects☆13Apr 23, 2019Updated 6 years ago
- Population-scale genotyping using pangenome graphs☆197Jan 9, 2025Updated last year
- Convert structural variants to sequence graphs [ VCF + FASTA ---> GFA ]☆11Mar 6, 2024Updated 2 years ago
- FermiKit small variant calls for public SGDP samples☆17Sep 22, 2016Updated 9 years ago
- A tool set for short variant discovery in genetic sequence data.☆204May 4, 2021Updated 4 years ago
- CAMSA: a tool for Comparative Analysis and Merging of Scaffold Assemblies☆25Apr 13, 2020Updated 5 years ago
- ☆11Apr 3, 2023Updated 2 years ago
- SMRT-SV: Structural variant and indel caller for PacBio reads☆28Feb 21, 2019Updated 7 years ago