uio-bmi / two_step_graph_mapper
☆21Updated 5 years ago
Related projects ⓘ
Alternatives and complementary repositories for two_step_graph_mapper
- Improved Phased Assembler☆28Updated 2 years ago
- ☆31Updated 4 years ago
- Code for phasing SVs with SNPs☆52Updated 4 years ago
- CAMSA: a tool for Comparative Analysis and Merging of Scaffold Assemblies☆24Updated 4 years ago
- Pipeline for structural variant image curation and analysis.☆48Updated 2 years ago
- Population-scale detection of non-reference sequence variants using colored de Bruijn Graphs☆24Updated 6 months ago
- A module for improving the insertion sequences of structural variant calls☆29Updated 3 years ago
- assembly evaluation tool☆34Updated 2 years ago
- MarginPolish: Graph based assembly polishing☆45Updated 3 years ago
- This is an unsupported fork of the PacBio blasr aligner. It contains my (very beta) optimizations and new functionality. It may disappea…☆21Updated 5 years ago
- Identifying repeats in high-throughput sequencing data☆15Updated 7 months ago
- Kmer based genotyper for short reads.☆23Updated 3 years ago
- Workflows for correcting and scaffolding long-read (PacBio, nanopore) genome assemblies using optical mapping and/or Dovetail Hi-C data☆21Updated 4 years ago
- Tumour-only somatic mutation calling using long reads☆24Updated 3 weeks ago
- Compute N50/NG50 and auN/auNG☆31Updated last year
- Population-wide Deletion Calling☆35Updated 2 months ago
- Transposable Elements MOvement detection using LOng reads☆19Updated this week
- Annotated Genome Optimization Using Transcriptome Information☆20Updated 4 years ago
- Structural variant caller☆54Updated 2 years ago
- Identification of segmental duplications in the genome☆26Updated 2 years ago
- TideHunter: efficient and sensitive tandem repeat detection from noisy long reads using seed-and-chain☆19Updated 5 months ago
- Swipe your Structural Variants called on long (ONT/PacBio) reads with short exact (Illumina) reads.☆32Updated 2 years ago
- a simple C++ library for parsing and manipulating VCF files, + many command-line utilities☆19Updated 7 years ago
- Exact Tandem Repeat Finder (not a TRF replacement)☆45Updated 5 years ago
- My experimental tools on top of htslib. NOT OFFICIAL!!!☆54Updated last year
- An algorithm for centromere assembly using long error-prone reads☆26Updated 3 years ago
- Convert HAL to VG☆21Updated 3 months ago
- FastK based version of Merqury☆22Updated 3 weeks ago
- Haploidy and Size Completeness Estimation☆13Updated 7 months ago
- Genome assembly scaffolding using information from paired-end/mate-pair libraries, long reads, and synteny to closely related species.☆24Updated 5 years ago