uio-bmi / two_step_graph_mapperLinks
☆21Updated 6 years ago
Alternatives and similar repositories for two_step_graph_mapper
Users that are interested in two_step_graph_mapper are comparing it to the libraries listed below
Sorting:
- Method to optimally select samples for validation and resequencing☆30Updated 4 years ago
- A module for improving the insertion sequences of structural variant calls☆33Updated 4 years ago
- Functions to compare a SV call sets against a truth set.☆30Updated 7 months ago
- Population-wide Deletion Calling☆35Updated 9 months ago
- base-accurate DNA sequence alignments using edlib and mashmap2☆32Updated 4 years ago
- Improved Phased Assembler☆28Updated 3 years ago
- CAMSA: a tool for Comparative Analysis and Merging of Scaffold Assemblies☆25Updated 5 years ago
- Identification of segmental duplications in the genome☆27Updated 3 years ago
- Archived version 1.0.2☆16Updated 6 years ago
- An algorithm for centromere assembly using long error-prone reads☆25Updated 4 years ago
- ☆51Updated last year
- ☆31Updated 6 years ago
- Exact Tandem Repeat Finder (not a TRF replacement)☆51Updated 6 years ago
- R package and wrapper functions for identifying serial structural variations from genome assemblies☆29Updated last year
- Phase reads, assemble haplotypes and detect SVs☆19Updated 5 years ago
- Segmental Duplication Assembler (SDA).☆43Updated 2 years ago
- Swipe your Structural Variants called on long (ONT/PacBio) reads with short exact (Illumina) reads.☆32Updated 3 years ago
- ☆35Updated 5 years ago
- Kmer based genotyper for short reads.☆23Updated 4 years ago
- Pipeline for structural variant image curation and analysis.☆49Updated 4 years ago
- Lift-over alignments from variant-aware references☆34Updated 2 years ago
- Convert HAL to VG☆23Updated last year
- Dynamic time warping of Oxford Nanopore squiggle data to characterize tandem repeats.☆32Updated 5 years ago
- Tool for decomposition centromeric assemblies and long reads into monomers☆37Updated 3 years ago
- Improved structural variant discovery in accurate long reads using sample-specific strings (SFS)☆47Updated 5 months ago
- Tool for assessing/improving assembly quality in extra-long tandem repeats☆47Updated 4 years ago
- Custom tools to 'facilitate' BioNano Genomics data analysis☆34Updated 7 years ago
- Code for phasing SVs with SNPs☆54Updated 5 years ago
- Code for building and testing variant ranking strategies☆17Updated 5 months ago
- use variant nesting information to flter overlapping sites from vg deconstruct output☆31Updated 7 months ago