Alternatives and similar repositories for Multi-genome-Reference:

Users that are interested in Multi-genome-Reference are comparing it to the libraries listed below

• jydu / maffilter
  The MafFilter genome alignment processor
  ☆17Updated 5 months ago
• zeeev / DASVC
  De-novo Assembly Structural Variant Caller
  ☆13Updated 8 years ago
• esolares / HapSolo
  Reduction of Althaps and Duplicate Contigs for Improved Hi-C Scaffolding
  ☆19Updated 6 months ago
• jnarayan81 / parallelLastz
  parallelLastz: Running Lastz in parallel
  ☆15Updated 5 months ago
• Uauy-Lab / pangenome-haplotypes
  Scripts to do haplotype analysis on pan genomes.
  ☆21Updated 4 years ago
• schneebergerlab / GameteBinning
  ☆12Updated 4 years ago
• dfguan / pin_hic
  A Hi-C scaffolding method
  ☆22Updated 3 years ago
• evotools / CattleGraphGenomePaper
  Set of script for the paper on the cattle graph genome
  ☆13Updated 2 years ago
• idanefroni / Conservatory
  Identification of conserved non-coding sequences in plants
  ☆14Updated last month
• glogsdon1 / sunk-based_assembly
  ☆15Updated 3 years ago
• njdbickhart / GoatAssemblyScripts
  A loose collection of scripts and utilities for processing and analyzing the Goat reference genome assembly
  ☆11Updated 7 years ago
• wtsi-hpag / scaffHiC
  Pipeline for genome scaffolding by modelling distributions of HiC pairs
  ☆10Updated 2 years ago
• WarrenLab / chicken-pangenome-paper
  Scripts used to perform analyses in Rice et al. (2023)
  ☆15Updated last year
• fritzsedlazeck / nibSV
  Kmer based genotyper for short reads.
  ☆23Updated 3 years ago
• wtsi-hpag / scanPAV
  Pipeline to detect PAVs (presence/absence variations) in genome comparison using whole genome alignment.
  ☆29Updated 6 years ago
• phasegenomics / matlock
  Simple tools for working with Hi-C data
  ☆16Updated 6 years ago
• davidebolo1993 / cosigt
  ☆15Updated 2 weeks ago
• kammoji / gapFinisher
  A reliable gap filling pipeline for draft genomes
  ☆11Updated 5 years ago
• ekg / fastix
  Prefix-renaming FASTA records really fast.
  ☆17Updated 7 months ago
• andreaminio / HaploSync
  Tools for haplotype-wise reconstruction of pseudomolecules
  ☆20Updated 4 months ago
• TNTurnerLab / HAT
  HAT is a set of tools for calling de novo variants from whole-genome sequencing data.
  ☆23Updated 11 months ago
• GonzalezLab / T-lex3
  ☆15Updated 4 years ago
• marbl / training
  Genome Assembly 102
  ☆14Updated last month
• yangli557 / AnnoSINE
  SINE annotation tool for plant genomes
  ☆17Updated last year
• rlorigro / simple-dotplot
  Very simple and configurable all-in-one dotplot program
  ☆12Updated last year
• magspho / hifieval
  a tool to evaluate long-read error correction mainly with PacBio High-Fidelity Reads (HiFi reads).
  ☆21Updated last year
• isugifNF / polishCLR
  A nextflow pipeline for polishing CLR assemblies
  ☆17Updated 2 years ago
• kehrlab / PopIns2
  Population-scale detection of non-reference sequence variants using colored de Bruijn Graphs
  ☆24Updated 9 months ago