EichlerLab / pacbio_variant_caller
SMRT-SV: Structural variant and indel caller for PacBio reads
☆28Updated 5 years ago
Related projects ⓘ
Alternatives and complementary repositories for pacbio_variant_caller
- Structural variant caller☆54Updated 2 years ago
- calling SVs from Blasr contig level alignments☆53Updated 6 years ago
- Code for phasing SVs with SNPs☆52Updated 4 years ago
- Segmental Duplication Assembler (SDA).☆44Updated last year
- ☆31Updated 4 years ago
- An easy way to run BioNano genomic analysis☆27Updated 3 years ago
- Custom tools to 'facilitate' BioNano Genomics data analysis☆33Updated 6 years ago
- ☆79Updated 6 months ago
- ☆46Updated 4 months ago
- ☆20Updated last year
- Genome-wide reconstruction of complex structural variants☆39Updated 2 years ago
- Variant annotation and merging pipeline☆29Updated 3 weeks ago
- heuristics to merge structural variant calls in VCF format.☆35Updated 8 years ago
- Detection and genotyping of structural variants☆17Updated 3 weeks ago
- ☆33Updated 7 months ago
- TGS scaffolding☆45Updated 3 years ago
- SV genotyping with long reads☆40Updated last year
- Structural Variants Pipeline for Long Reads☆44Updated 6 years ago
- ☆34Updated 4 years ago
- My experimental tools on top of htslib. NOT OFFICIAL!!!☆54Updated last year
- Tool for assessing/improving assembly quality in extra-long tandem repeats☆45Updated 3 years ago
- Pipeline for scaffolding and breaking a genome assembly using 10x genomics linked-reads☆22Updated 2 years ago
- Swipe your Structural Variants called on long (ONT/PacBio) reads with short exact (Illumina) reads.☆32Updated 2 years ago
- This is an unsupported fork of the PacBio blasr aligner. It contains my (very beta) optimizations and new functionality. It may disappea…☆21Updated 5 years ago
- Population-wide Deletion Calling☆35Updated 2 months ago
- Exact Tandem Repeat Finder (not a TRF replacement)☆45Updated 5 years ago
- assembly evaluation tool☆34Updated 2 years ago
- Genome scaffolding based on HiC data in heterozygous and high ploidy genomes☆59Updated 3 years ago