Alternatives and similar repositories for pacbio_variant_caller:

Users that are interested in pacbio_variant_caller are comparing it to the libraries listed below

• EichlerLab / svpop
  Variant annotation and merging pipeline
  ☆31Updated 3 weeks ago
• zeeev / smartie-sv
  calling SVs from Blasr contig level alignments
  ☆54Updated 6 years ago
• EichlerLab / smrtsv2
  Structural variant caller
  ☆54Updated 3 years ago
• smehringer / SViper
  Swipe your Structural Variants called on long (ONT/PacBio) reads with short exact (Illumina) reads.
  ☆32Updated 2 years ago
• schatzlab / crossstitch
  Code for phasing SVs with SNPs
  ☆52Updated 4 years ago
• mrvollger / SDA
  Segmental Duplication Assembler (SDA).
  ☆44Updated last year
• llecompte / SVJedi
  SV genotyping with long reads
  ☆40Updated last year
• vgteam / sv-genotyping-paper
  ☆31Updated 5 years ago
• WGLab / LinkedSV
  ☆21Updated last week
• mcfrith / tandem-genotypes
  ☆48Updated 7 months ago
• Nucleomics-VIB / bionano-tools
  Custom tools to 'facilitate' BioNano Genomics data analysis
  ☆33Updated 6 years ago
• zeeev / mergeSVcallers
  heuristics to merge structural variant calls in VCF format.
  ☆35Updated 8 years ago
• ListerLab / TEPID
  Transposable element polymorphism identification
  ☆33Updated 4 years ago
• shingocat / lrscaf
  TGS scaffolding
  ☆46Updated 3 years ago
• Nextomics / nextsv
  ☆33Updated 9 months ago
• AppliedBioinformatics / runBNG
  An easy way to run BioNano genomic analysis
  ☆27Updated 3 years ago
• kakitone / finishingTool
  finshingTool
  ☆55Updated 8 years ago
• MeHelmy / princess
  ☆79Updated 8 months ago
• JialiUMassWengLab / TEMP
  TEMP is a software package for detecting transposable elements (TEs) insertions and excisions from pooled high-throughput sequencing dat…
  ☆21Updated 7 years ago
• lh3 / htsbox
  My experimental tools on top of htslib. NOT OFFICIAL!!!
  ☆54Updated last year
• farhangus / Sniffles2_plot
  ☆27Updated 5 months ago
• lh3 / etrf
  Exact Tandem Repeat Finder (not a TRF replacement)
  ☆47Updated 5 years ago
• ablab / TandemTools
  Tool for assessing/improving assembly quality in extra-long tandem repeats
  ☆46Updated 3 years ago
• HullUni-bioinformatics / TE-search-tools
  Python wrappers for programs that search for transposable elements
  ☆19Updated 8 years ago
• benedictpaten / marginPhase
  ☆34Updated 4 years ago
• vpc-ccg / sedef
  Identification of segmental duplications in the genome
  ☆26Updated 2 years ago
• wtsi-hpag / Scaff10X
  Pipeline for scaffolding and breaking a genome assembly using 10x genomics linked-reads
  ☆22Updated 2 years ago
• dfguan / asset
  assembly evaluation tool
  ☆34Updated 2 years ago
• jbelyeu / SV-plaudit
  Pipeline for structural variant image curation and analysis.
  ☆48Updated 3 years ago
• kehrlab / PopDel
  Population-wide Deletion Calling
  ☆35Updated 4 months ago