hardingnj / xpclr
Code to compute the XP-CLR statistic to infer natural selection
☆93Updated 2 years ago
Alternatives and similar repositories for xpclr:
Users that are interested in xpclr are comparing it to the libraries listed below
- Multi-level visualization of genomic statistical variables on rectangular chromosomes☆86Updated 2 months ago
- VCF2Dis: A new simple and efficient software to calculate p-distance matrix and construct population phylogeny based Variant Call Forma…☆84Updated last week
- Few scripts facilitating the extraction of info from Repeat Masker .out files☆78Updated 3 years ago
- Scripts for analysis used during the course☆87Updated 9 months ago
- A new simple and efficient software to PCA and Cluster For popolation VCF File☆68Updated last week
- NLR-Annotator upload☆63Updated last year
- ☆73Updated 7 months ago
- Haplotype based scans for selection☆120Updated this week
- A library for running k-mers based GWAS☆106Updated 3 months ago
- GCE (genomic charactor estimator) is a bayes model based method to estimate the genome size, genomic repeat content and the heterozygsis…☆48Updated 4 years ago
- Reference-free profiling of polyploid genomes☆112Updated 7 months ago
- ☆82Updated 3 years ago
- A pipeline used to identify different modes of duplicated gene pairs☆95Updated 4 years ago
- Genomic related tools☆71Updated 3 years ago
- A set of functions to visualise genotypes based on a VCF☆85Updated 3 years ago
- DNA序列比对结果 可视化展示工具☆45Updated 2 years ago
- Fast calculation of Patterson's D (ABBA-BABA) and the f4-ratio statistics across many populations/species☆166Updated last month
- Generate an interactive dot plot from mummer or minimap alignments☆195Updated last year
- Useful bioinformatic scripts☆54Updated 2 months ago
- A pipeline to generate a phylogenetic tree from huge SNP data☆86Updated last year
- A program to call variants from genome alignment☆78Updated 10 months ago
- SMC++ infers population history from whole-genome sequence data.☆159Updated last year
- An accessible and flexible tool for fitting demographic models with dadi using custom or published models (available here), conducting go…☆63Updated 9 months ago
- This is an archive version of old RepBase library (v20170127) for RepeatMasker.☆29Updated 3 years ago
- ☆70Updated 4 years ago
- Tutorials on phylogenetic and phylogenomic inference☆43Updated 2 weeks ago
- ☆26Updated 2 months ago
- Version 5 of the CAFE phylogenetics software☆121Updated this week
- Tools for working with second gen assemblies, fasta sequences, etc☆92Updated 8 years ago
- Pinpoints the mutation favored by selection☆33Updated 3 years ago