hardingnj / xpclrLinks
Code to compute the XP-CLR statistic to infer natural selection
☆100Updated 3 years ago
Alternatives and similar repositories for xpclr
Users that are interested in xpclr are comparing it to the libraries listed below
Sorting:
- Multi-level visualization of genomic statistical variables on rectangular chromosomes☆102Updated 2 weeks ago
- VCF2Dis: A new simple and efficient software to calculate p-distance matrix and construct population phylogeny based Variant Call Forma…☆98Updated 2 months ago
- Haplotype based scans for selection☆134Updated last week
- Scripts for analysis used during the course☆92Updated last year
- A library for running k-mers based GWAS☆116Updated last year
- Few scripts facilitating the extraction of info from Repeat Masker .out files☆83Updated 4 years ago
- NLR-Annotator upload☆73Updated 2 years ago
- SMC++ infers population history from whole-genome sequence data.☆167Updated last year
- A pipeline to generate a phylogenetic tree from huge SNP data☆91Updated last year
- ☆82Updated last year
- GCE (genomic charactor estimator) is a bayes model based method to estimate the genome size, genomic repeat content and the heterozygsis…☆53Updated 5 years ago
- A set of functions to visualise genotypes based on a VCF☆87Updated 3 years ago
- Reference-free profiling of polyploid genomes☆129Updated 3 weeks ago
- A new simple and efficient software to PCA and Cluster For popolation VCF File☆81Updated 4 months ago
- TEsorter: an accurate and fast method to classify LTR-retrotransposons in plant genomes☆100Updated 8 months ago
- Detailed bioinformatics scripts and methods used in the NAM genome paper.☆85Updated 9 months ago
- This is an archive version of old RepBase library (v20170127) for RepeatMasker.☆37Updated 4 years ago
- A pipeline used to identify different modes of duplicated gene pairs☆108Updated 3 months ago
- Fast calculation of Patterson's D (ABBA-BABA) and the f4-ratio statistics across many populations/species☆179Updated 10 months ago
- MitoFinder: efficient automated large-scale extraction of mitogenomic data from high throughput sequencing data☆111Updated last month
- A tool to extract and visualize the results of CAFE (Computational Analysis of gene Family Evolution)☆63Updated 6 years ago
- A program to call variants from genome alignment☆81Updated 6 months ago
- Tutorial about R package PopGenome☆44Updated 6 years ago
- An accessible and flexible tool for fitting demographic models with dadi using custom or published models (available here), conducting go…☆67Updated last year
- Python package and CLI for whole-genome duplication related analyses. **This package is deprecated in favor of** https://github.com/heche…☆86Updated 2 years ago
- This script will extract the intron feature gff3 and sequence from gene_exon gff3 and fasta file.☆33Updated 7 years ago
- Genomic related tools☆71Updated 3 years ago
- Mapping pipeline for data generated using Arima-HiC☆80Updated last year
- ☆71Updated 5 years ago
- Useful bioinformatic scripts☆58Updated 11 months ago