hardingnj / xpclr
Code to compute the XP-CLR statistic to infer natural selection
☆95Updated 2 years ago
Alternatives and similar repositories for xpclr:
Users that are interested in xpclr are comparing it to the libraries listed below
- VCF2Dis: A new simple and efficient software to calculate p-distance matrix and construct population phylogeny based Variant Call Forma…☆88Updated last week
- Multi-level visualization of genomic statistical variables on rectangular chromosomes☆88Updated 4 months ago
- Few scripts facilitating the extraction of info from Repeat Masker .out files☆80Updated 3 years ago
- A new simple and efficient software to PCA and Cluster For popolation VCF File☆70Updated 2 months ago
- NLR-Annotator upload☆65Updated last year
- ☆78Updated 9 months ago
- Scripts for analysis used during the course☆90Updated 11 months ago
- A library for running k-mers based GWAS☆107Updated 5 months ago
- GCE (genomic charactor estimator) is a bayes model based method to estimate the genome size, genomic repeat content and the heterozygsis…☆50Updated 5 years ago
- Reference-free profiling of polyploid genomes☆115Updated 9 months ago
- Useful bioinformatic scripts☆56Updated 4 months ago
- This is an archive version of old RepBase library (v20170127) for RepeatMasker.☆33Updated 3 years ago
- A pipeline to generate a phylogenetic tree from huge SNP data☆87Updated last year
- ☆84Updated 3 years ago
- A pipeline used to identify different modes of duplicated gene pairs☆98Updated last month
- Fast calculation of Patterson's D (ABBA-BABA) and the f4-ratio statistics across many populations/species☆169Updated 3 months ago
- DNA序列比对结果 可视化展示工具☆47Updated 2 years ago
- Haplotype based scans for selection☆123Updated this week
- SMC++ infers population history from whole-genome sequence data.☆163Updated last year
- Version 5 of the CAFE phylogenetics software☆131Updated 2 months ago
- ☆71Updated 4 years ago
- A set of functions to visualise genotypes based on a VCF☆85Updated 3 years ago
- Tools for working with second gen assemblies, fasta sequences, etc☆93Updated 8 years ago
- Genomic related tools☆70Updated 3 years ago
- Generate an interactive dot plot from mummer or minimap alignments☆200Updated last year
- Analysis of convergence between organismal traits and DNA/protein sequences☆50Updated last week
- Here, we sequence and de novo assemble chromosome-scale genomes of nine wild species and two cultivated accessions of tomato and construc…☆51Updated 10 months ago
- A program to call variants from genome alignment☆79Updated last year
- Toolkits Integrated for Genetic and Evolutionary Research☆16Updated last year
- Meta-pipeline to identify transposable element insertions using next generation sequencing data☆97Updated last year