edawson / gfaklugeLinks
A C++ library and utilities for manipulating the Graphical Fragment Assembly format.
☆54Updated 3 years ago
Alternatives and similar repositories for gfakluge
Users that are interested in gfakluge are comparing it to the libraries listed below
Sorting:
- ☆28Updated last month
- Symmetric DUST for finding low-complexity regions in DNA sequences☆42Updated last year
- MarginPolish: Graph based assembly polishing☆46Updated 4 years ago
- GFAffix identifies walk-preserving shared affixes in variation graphs and collapses them into a non-redundant graph structure.☆36Updated last week
- A reimplementation of the WaveFront Alignment algorithm at low memory☆49Updated last year
- Versatile simulator for structural variance and Nanopore/PacBio sequencing reads☆25Updated last year
- Pan-Genomic Matching Statistics☆52Updated last year
- Mumemto: multi-MUM and MEM finding across pangenomes☆82Updated last week
- ☆34Updated 5 years ago
- Lift-over alignments from variant-aware references☆34Updated 2 years ago
- Tool for assessing/improving assembly quality in extra-long tandem repeats☆46Updated 4 years ago
- base-accurate DNA sequence alignments using edlib and mashmap2☆33Updated 4 years ago
- Scalable long read self-correction and assembly polishing with multiple sequence alignment☆55Updated last year
- URMAP ultra-fast read mapper☆38Updated 4 years ago
- Assembler for raw de novo genome assembly of long uncorrected reads.☆37Updated 5 years ago
- Segmental Duplication Assembler (SDA).☆44Updated 2 years ago
- Estimating k-mer coverage histogram of genomics data☆78Updated last year
- Exact Tandem Repeat Finder (not a TRF replacement)☆49Updated 5 years ago
- deSALT - De Bruijn graph-based Spliced Aligner for Long Transcriptome reads☆44Updated 2 years ago
- Graph based multi genome aligner☆47Updated 3 years ago
- a toolset for fast DNA read set matching and assembly using a new type of reduced kmer☆37Updated 3 years ago
- adds sample names and read-group (RG) tags to BAM alignments☆51Updated 4 years ago
- The Modular Aligner and The Modular SV Caller☆46Updated last year
- This is an updated mirror of the original PacBio Read Simulator☆38Updated 7 years ago
- REINDEER REad Index for abuNDancE quERy☆58Updated 10 months ago
- ✏️ Genome assembly polishing & SNV detection☆68Updated 3 months ago
- ☆47Updated 4 years ago
- Gfapy: a flexible and extensible software library for handling sequence graphs in Python☆67Updated 7 months ago
- linearize and simplify variation graphs using blocked partial order alignment☆57Updated last month
- Statistics and analysis for variation graphs☆40Updated 5 months ago