edawson / gfaklugeLinks
A C++ library and utilities for manipulating the Graphical Fragment Assembly format.
☆55Updated 3 years ago
Alternatives and similar repositories for gfakluge
Users that are interested in gfakluge are comparing it to the libraries listed below
Sorting:
- Graphical interactive tool for the visualization of sequence graphs in GFA format.☆71Updated 6 years ago
- A reimplementation of the WaveFront Alignment algorithm at low memory☆50Updated last year
- base-accurate DNA sequence alignments using edlib and mashmap2☆32Updated 4 years ago
- Pangenome Sequence Naming: a backwards-compatible hack to simplify the identification of samples and haplotypes in pangenomes☆44Updated last year
- Tool for assessing/improving assembly quality in extra-long tandem repeats☆47Updated 4 years ago
- Python wrapper for wavefront alignment using WFA2-lib☆38Updated last year
- GFAffix identifies walk-preserving shared affixes in variation graphs and collapses them into a non-redundant graph structure.☆36Updated 7 months ago
- Pan-Genomic Matching Statistics☆55Updated last year
- ☆35Updated 5 years ago
- MarginPolish: Graph based assembly polishing☆47Updated 5 years ago
- ☆39Updated 2 years ago
- GFA insert into GenomicSQLite☆49Updated 4 years ago
- Code to create a PRG from a Multiple Sequence Alignment file☆25Updated 4 months ago
- Statistics and analysis for variation graphs☆47Updated last year
- ☆46Updated 5 years ago
- Differential k-mer analysis☆39Updated last year
- ☆51Updated last year
- linearize and simplify variation graphs using blocked partial order alignment☆59Updated 5 months ago
- ☆31Updated 8 months ago
- TGS scaffolding☆47Updated 4 years ago
- Banded Striped DNA Sequence Alignment☆49Updated 2 years ago
- URMAP ultra-fast read mapper☆38Updated 5 years ago
- Improved structural variant discovery in accurate long reads using sample-specific strings (SFS)☆47Updated 4 months ago
- ⚡️ 🧬 Fulgor is a fast and space-efficient colored de Bruijn graph index.☆59Updated last month
- Exact Tandem Repeat Finder (not a TRF replacement)☆51Updated 6 years ago
- Mumemto: multi-MUM and MEM finding across pangenomes☆127Updated last month
- Panache is a web-based interface designed for the visualization of linearized pangenomes. It can be used to show presence/absence informa…☆46Updated 2 years ago
- Lift-over alignments from variant-aware references☆34Updated 2 years ago
- Improved Phased Assembler☆28Updated 3 years ago
- Efficient low-divergence mapping of long reads in minimizer space☆70Updated 2 years ago