Illumina / paragraphView external linksLinks
Graph realignment tools for structural variants
☆165Dec 8, 2022Updated 3 years ago
Alternatives and similar repositories for paragraph
Users that are interested in paragraph are comparing it to the libraries listed below
Sorting:
- Jasmine: SV Merging Across Samples☆240Dec 20, 2024Updated last year
- Toolset for SV simulation, comparison and filtering☆411Dec 1, 2023Updated 2 years ago
- A method for variant graph genotyping based on exact alignment of k-mers☆87Apr 1, 2019Updated 6 years ago
- Structural variant merging tool☆57Aug 23, 2024Updated last year
- alignment to variation graph inducer☆157Jan 20, 2026Updated 3 weeks ago
- Population-scale genotyping using pangenome graphs☆195Jan 9, 2025Updated last year
- Tools for processing and analyzing structural variants.☆156May 2, 2022Updated 3 years ago
- Toolkit for VNTR genotyping and repeat-pan genome graph construction☆31Aug 18, 2025Updated 5 months ago
- A utility for merging and genotyping Illumina-style GVCFs.☆33Feb 26, 2019Updated 6 years ago
- don't get DUP'ed or DEL'ed by your putative SVs.☆107Dec 14, 2020Updated 5 years ago
- Pipeline for structural variant image curation and analysis.☆49Dec 5, 2021Updated 4 years ago
- Structural variant toolkit for VCFs☆397Jan 23, 2026Updated 3 weeks ago
- Genome inference from a population reference graph☆96Apr 1, 2025Updated 10 months ago
- Structural variant detection and association testing☆108Feb 2, 2023Updated 3 years ago
- ☆101Apr 22, 2024Updated last year
- Tools for manipulating sequence graphs in the GFA and rGFA formats☆248Dec 16, 2025Updated last month
- ☆31Nov 25, 2019Updated 6 years ago
- structural variant calling and genotyping with existing tools, but, smoothly.☆263Jun 17, 2024Updated last year
- A tool for estimating repeat sizes☆206Jan 30, 2024Updated 2 years ago
- Bayesian genotyper for structural variants☆136Mar 6, 2021Updated 4 years ago
- Pangenome-based genome inference☆155Dec 1, 2025Updated 2 months ago
- ☆284Dec 29, 2025Updated last month
- Ultra-efficient mapping-free structural variation genotyper☆20Jul 28, 2021Updated 4 years ago
- Tools for the analysis of structural variation in genomes☆81Mar 25, 2024Updated last year
- Sequence-to-graph mapper and graph generator☆470Aug 11, 2025Updated 6 months ago
- A module for improving the insertion sequences of structural variant calls☆33Jul 14, 2021Updated 4 years ago
- Pangenome graphs (review article on graph-based pangenomic methods)☆72Apr 15, 2020Updated 5 years ago
- Structural variation and indel detection by local assembly☆251Sep 16, 2025Updated 4 months ago
- Kmer Analysis of Pileups for Genotyping☆35Jan 30, 2026Updated 2 weeks ago
- Population-scale detection of non-reference sequence variants using colored de Bruijn Graphs☆26Apr 29, 2024Updated last year
- Population-based detection of structural variation from High-Throughput Sequencing.☆33Aug 9, 2022Updated 3 years ago
- displays multiple genomic sequences in the form of a tube map☆216Nov 12, 2025Updated 3 months ago
- Reference-based variant calling pipeline for a pair of phased haplotype assemblies☆105Jun 6, 2021Updated 4 years ago
- Method to optimally select samples for validation and resequencing☆30Apr 6, 2021Updated 4 years ago
- Structural Variant Index☆75Dec 13, 2024Updated last year
- Structural variation caller using third generation sequencing☆634Dec 18, 2025Updated last month
- Alignment-free genotyper for SNPs and short indels, implemented in Python.☆54Mar 7, 2025Updated 11 months ago
- Plot structural variant signals from many BAMs and CRAMs☆558Jul 13, 2024Updated last year
- SRF: Satellite Repeat Finder☆101Jan 8, 2024Updated 2 years ago