Illumina / paragraph

Related projects ⓘ

Alternatives and complementary repositories for paragraph

• mkirsche / Jasmine
  Jasmine: SV Merging Across Samples
  ☆180Updated last year
• mahulchak / quickmerge
  A simple and fast metassembler and assembly gap filler designed for long molecule based assemblies.
  ☆200Updated last year
• ChaissonLab / LRA
  Long read aligner
  ☆112Updated last year
• PacificBiosciences / pbsv
  pbsv - PacBio structural variant (SV) calling and analysis tools
  ☆129Updated last week
• wdecoster / nanocomp
  Comparison of multiple long read datasets
  ☆103Updated this week
• eldariont / svim
  Structural Variant Identification Method using Long Reads
  ☆155Updated 3 years ago
• dfguan / purge_dups
  haplotypic duplication identification tool
  ☆209Updated 10 months ago
• xiaochuanle / NECAT
  Nanopore data assembler
  ☆135Updated 2 years ago
• nanoporetech / pychopper
  A tool to identify, orient, trim and rescue full length cDNA reads
  ☆80Updated 2 years ago
• vibansal / HapCUT2
  software tools for haplotype assembly from sequence data
  ☆206Updated 2 months ago
• PacificBiosciences / ccs
  CCS: Generate Highly Accurate Single-Molecule Consensus Reads (HiFi Reads)
  ☆117Updated 7 months ago
• KolmogorovLab / Severus
  A tool for somatic structural variant calling using long reads
  ☆102Updated this week
• lh3 / pangene
  Constructing a pangenome gene graph
  ☆174Updated 3 months ago
• Illumina / ExpansionHunter
  A tool for estimating repeat sizes
  ☆181Updated 9 months ago
• GenomeRIK / tama
  Transcriptome Annotation by Modular Algorithms (for long read RNA sequencing data)
  ☆128Updated last year
• bergmanlab / mcclintock
  Meta-pipeline to identify transposable element insertions using next generation sequencing data
  ☆93Updated 9 months ago
• marbl / SALSA
  SALSA: A tool to scaffold long read assemblies with Hi-C data
  ☆182Updated 5 months ago
• adamewing / methylartist
  Tools for plotting methylation data in various ways
  ☆130Updated last month
• nanoporetech / pipeline-structural-variation
  Pipeline for calling structural variations in whole genomes sequencing Oxford Nanopore data
  ☆114Updated 3 years ago
• epi2me-labs / wf-transcriptomes
  ☆74Updated this week
• hall-lab / svtyper
  Bayesian genotyper for structural variants
  ☆126Updated 3 years ago
• marbl / Winnowmap
  Long read / genome alignment software
  ☆257Updated this week
• walaj / svaba
  Structural variation and indel detection by local assembly
  ☆233Updated 5 months ago
• dpryan79 / MethylDackel
  A (mostly) universal methylation extractor for BS-seq experiments.
  ☆162Updated 4 months ago
• wdecoster / cramino
  A *fast* tool for BAM/CRAM quality evaluation, intended for long reads
  ☆127Updated this week
• PacificBiosciences / trgt
  Tandem repeat genotyping and visualization from PacBio HiFi data
  ☆105Updated last month
• brentp / jigv
  igv.js standalone page generator and automatic configuration to view bam/cram/vcf/bed. "working in under 1 minute"
  ☆122Updated last year
• Illumina / ExpansionHunterDenovo
  A suite of tools for detecting expansions of short tandem repeats
  ☆80Updated last year
• PacificBiosciences / pbmm2
  A minimap2 frontend for PacBio native data formats
  ☆176Updated last week
• glennhickey / progressiveCactus
  Distribution package for the Prgressive Cactus multiple genome aligner. Dependencies are linked as submodules
  ☆83Updated 6 years ago