Alternatives and similar repositories for paragraph

Users that are interested in paragraph are comparing it to the libraries listed below

• PacificBiosciences / pbsv
  pbsv - PacBio structural variant (SV) calling and analysis tools
  ☆160Updated 8 months ago
• marbl / SALSA
  SALSA: A tool to scaffold long read assemblies with Hi-C data
  ☆187Updated last year
• eldariont / svim
  Structural Variant Identification Method using Long Reads
  ☆178Updated 4 years ago
• mkirsche / Jasmine
  Jasmine: SV Merging Across Samples
  ☆230Updated 11 months ago
• PacificBiosciences / trgt
  Tandem repeat genotyping and visualization from PacBio HiFi data
  ☆128Updated last week
• nanoporetech / pipeline-structural-variation
  Pipeline for calling structural variations in whole genomes sequencing Oxford Nanopore data
  ☆114Updated 4 years ago
• eblerjana / pangenie
  Pangenome-based genome inference
  ☆149Updated last week
• vibansal / HapCUT2
  software tools for haplotype assembly from sequence data
  ☆224Updated 9 months ago
• malonge / RaGOO
  RaGOO is no longer supported. Please use RagTag instead: https://github.com/malonge/RagTag
  ☆173Updated 4 years ago
• KolmogorovLab / Severus
  A tool for somatic structural variant calling using long reads
  ☆150Updated last month
• ChaissonLab / LRA
  Long read aligner
  ☆115Updated 2 years ago
• nanoporetech / pychopper
  A tool to identify, orient, trim and rescue full length cDNA reads
  ☆83Updated 3 years ago
• EichlerLab / pav
  Phased assembly variant caller
  ☆129Updated 11 months ago
• parklab / bamsnap
  ☆124Updated 3 months ago
• mroosmalen / nanosv
  SV caller for nanopore data
  ☆92Updated 5 years ago
• lh3 / gfatools
  Tools for manipulating sequence graphs in the GFA and rGFA formats
  ☆239Updated last year
• MariaNattestad / Assemblytics
  Assemblytics is a bioinformatics tool to detect and analyze structural variants from a genome assembly by comparing it to a reference gen…
  ☆145Updated 4 months ago
• ruanjue / smartdenovo
  Ultra-fast de novo assembler using long noisy reads
  ☆135Updated 4 years ago
• gymreklab / GangSTR
  A tool for profiling long STRs from short reads
  ☆101Updated 4 years ago
• nanoporetech / rerio
  Research release basecalling models and configurations
  ☆116Updated 5 months ago
• dnanexus-archive / parliament2
  Runs a combination of tools to generate structural variant calls on whole-genome sequencing data
  ☆103Updated 5 years ago
• bergmanlab / mcclintock
  Meta-pipeline to identify transposable element insertions using next generation sequencing data
  ☆104Updated 5 months ago
• lh3 / yak
  Yet another k-mer analyzer
  ☆151Updated last month
• tobiasrausch / wally
  Wally: Visualization of aligned sequencing reads and contigs
  ☆120Updated last month
• PacificBiosciences / pb-CpG-tools
  Collection of tools for the analysis of CpG data
  ☆97Updated 4 months ago
• hall-lab / svtyper
  Bayesian genotyper for structural variants
  ☆136Updated 4 years ago
• lh3 / pangene
  Constructing a pangenome gene graph
  ☆198Updated 3 months ago
• adamewing / methylartist
  Tools for plotting methylation data in various ways
  ☆164Updated this week
• informationsea / transanno
  accurate LiftOver tool for new genome assemblies
  ☆137Updated last year
• human-pangenomics / hpp_pangenome_resources
  ☆124Updated 2 years ago