Graph realignment tools for structural variants
☆168Dec 8, 2022Updated 3 years ago
Alternatives and similar repositories for paragraph
Users that are interested in paragraph are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Toolset for SV simulation, comparison and filtering☆424Dec 1, 2023Updated 2 years ago
- A method for variant graph genotyping based on exact alignment of k-mers☆88Apr 1, 2019Updated 7 years ago
- Jasmine: SV Merging Across Samples☆255Dec 20, 2024Updated last year
- Structural variant merging tool☆57Aug 23, 2024Updated last year
- alignment to variation graph inducer☆161Jun 17, 2026Updated 2 weeks ago
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- Pipeline for structural variant image curation and analysis.☆49Dec 5, 2021Updated 4 years ago
- Toolkit for VNTR genotyping and repeat-pan genome graph construction☆34Aug 18, 2025Updated 10 months ago
- don't get DUP'ed or DEL'ed by your putative SVs.☆108Dec 14, 2020Updated 5 years ago
- ☆31Nov 25, 2019Updated 6 years ago
- Structural variant toolkit for VCFs☆417May 22, 2026Updated last month
- Population-scale genotyping using pangenome graphs☆200Jan 9, 2025Updated last year
- A utility for merging and genotyping Illumina-style GVCFs.☆34Feb 26, 2019Updated 7 years ago
- Kmer Analysis of Pileups for Genotyping☆40Mar 6, 2026Updated 4 months ago
- Tools for processing and analyzing structural variants.☆157May 2, 2022Updated 4 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Tools for manipulating sequence graphs in the GFA and rGFA formats☆252Dec 16, 2025Updated 6 months ago
- A tool for estimating repeat sizes☆215Jan 30, 2024Updated 2 years ago
- Sequence-to-graph mapper and graph generator☆482Aug 11, 2025Updated 10 months ago
- ☆101Apr 22, 2024Updated 2 years ago
- Structural variant detection and association testing☆109Feb 2, 2023Updated 3 years ago
- Ultra-efficient mapping-free structural variation genotyper☆20Jul 28, 2021Updated 4 years ago
- structural variant calling and genotyping with existing tools, but, smoothly.☆266Jun 17, 2024Updated 2 years ago
- Genome inference from a population reference graph☆96Apr 1, 2025Updated last year
- A module for improving the insertion sequences of structural variant calls☆33Jul 14, 2021Updated 4 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Bayesian genotyper for structural variants☆136Apr 13, 2026Updated 2 months ago
- ☆289Dec 29, 2025Updated 6 months ago
- Pangenome-based genome inference☆174Jun 15, 2026Updated 2 weeks ago
- Tools for the analysis of structural variation in genomes☆81Feb 23, 2026Updated 4 months ago
- Pangenome graphs (review article on graph-based pangenomic methods)☆73Apr 15, 2020Updated 6 years ago
- Recommended Graphtyper pipelines☆15Feb 22, 2021Updated 5 years ago
- displays multiple genomic sequences in the form of a tube map☆226Nov 12, 2025Updated 7 months ago
- ☆45May 8, 2024Updated 2 years ago
- Application of pan-genome for population☆121Oct 26, 2025Updated 8 months ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Structural variation and indel detection by local assembly☆256Jun 23, 2026Updated last week
- Population-scale detection of non-reference sequence variants using colored de Bruijn Graphs☆26Apr 29, 2024Updated 2 years ago
- Structural Variant Index☆76Dec 13, 2024Updated last year
- Population-based detection of structural variation from High-Throughput Sequencing.☆33Aug 9, 2022Updated 3 years ago
- Plot structural variant signals from many BAMs and CRAMs☆567Jul 13, 2024Updated last year
- Method to optimally select samples for validation and resequencing☆30Apr 6, 2021Updated 5 years ago
- A program to generate a graph which presents a simplified representation of several full length genomes☆13Aug 23, 2018Updated 7 years ago