Illumina / paragraphLinks
Graph realignment tools for structural variants
☆156Updated 2 years ago
Alternatives and similar repositories for paragraph
Users that are interested in paragraph are comparing it to the libraries listed below
Sorting:
- pbsv - PacBio structural variant (SV) calling and analysis tools☆149Updated 3 months ago
- Jasmine: SV Merging Across Samples☆215Updated 5 months ago
- A tool to identify, orient, trim and rescue full length cDNA reads☆82Updated 2 years ago
- Bayesian genotyper for structural variants☆133Updated 4 years ago
- Pipeline for calling structural variations in whole genomes sequencing Oxford Nanopore data☆114Updated 3 years ago
- A tool for somatic structural variant calling using long reads☆134Updated last month
- SALSA: A tool to scaffold long read assemblies with Hi-C data☆185Updated last year
- A simple and fast metassembler and assembly gap filler designed for long molecule based assemblies.☆204Updated 2 years ago
- software tools for haplotype assembly from sequence data☆218Updated 3 months ago
- VerifyBamID2: A robust tool for DNA contamination estimation from sequence reads using ancestry-agnostic method.☆97Updated last year
- Tandem repeat genotyping and visualization from PacBio HiFi data☆117Updated last month
- ☆112Updated last month
- Pangenome-based genome inference☆127Updated last month
- Constructing a pangenome gene graph☆188Updated this week
- Long read aligner☆115Updated 2 years ago
- ABRA2☆92Updated 2 years ago
- Toolkit for calling structural variants using short or long reads☆104Updated 2 weeks ago
- Transcriptome Annotation by Modular Algorithms (for long read RNA sequencing data)☆150Updated 2 years ago
- Tools for manipulating sequence graphs in the GFA and rGFA formats☆227Updated 9 months ago
- Tools for the analysis of structural variation in genomes☆79Updated last year
- A minimap2 frontend for PacBio native data formats☆197Updated 3 months ago
- Tools for plotting methylation data in various ways☆148Updated last week
- Phased assembly variant caller☆116Updated 6 months ago
- Tools for processing and analyzing structural variants.☆151Updated 3 years ago
- Structural variation and indel detection by local assembly☆246Updated last week
- ☆94Updated 3 weeks ago
- Comparison of multiple long read datasets☆132Updated 3 weeks ago
- GraffiTE is a pipeline that finds polymorphic transposable elements in genome assemblies and/or long reads, and genotypes the discovered …☆188Updated 2 weeks ago
- A tool for profiling long STRs from short reads☆97Updated 4 years ago
- Structural Variant Identification Method using Long Reads☆172Updated 3 years ago