Illumina / paragraphLinks
Graph realignment tools for structural variants
☆158Updated 2 years ago
Alternatives and similar repositories for paragraph
Users that are interested in paragraph are comparing it to the libraries listed below
Sorting:
- Jasmine: SV Merging Across Samples☆217Updated 6 months ago
- pbsv - PacBio structural variant (SV) calling and analysis tools☆154Updated 4 months ago
- Long read aligner☆115Updated 2 years ago
- software tools for haplotype assembly from sequence data☆219Updated 5 months ago
- SALSA: A tool to scaffold long read assemblies with Hi-C data☆187Updated last year
- Hierarchical Alignment Format☆170Updated 6 months ago
- Structural Variant Identification Method using Long Reads☆172Updated 4 years ago
- Bayesian genotyper for structural variants☆134Updated 4 years ago
- A tool for somatic structural variant calling using long reads☆138Updated last week
- Tools for plotting methylation data in various ways☆156Updated this week
- Pipeline for calling structural variations in whole genomes sequencing Oxford Nanopore data☆114Updated 3 years ago
- Tools for processing and analyzing structural variants.☆153Updated 3 years ago
- A tool to identify, orient, trim and rescue full length cDNA reads☆82Updated 3 years ago
- Assemblytics is a bioinformatics tool to detect and analyze structural variants from a genome assembly by comparing it to a reference gen…☆141Updated this week
- Phased assembly variant caller☆121Updated 7 months ago
- Pangenome-based genome inference☆133Updated 3 weeks ago
- Population-scale genotyping using pangenome graphs☆186Updated 6 months ago
- Tools for manipulating sequence graphs in the GFA and rGFA formats☆233Updated 11 months ago
- Toolkit for calling structural variants using short or long reads☆107Updated last month
- Structural variation and indel detection by local assembly☆247Updated 2 weeks ago
- Meta-pipeline to identify transposable element insertions using next generation sequencing data☆100Updated last month
- ☆123Updated 8 months ago
- VerifyBamID2: A robust tool for DNA contamination estimation from sequence reads using ancestry-agnostic method.☆97Updated last year
- Tools for the analysis of structural variation in genomes☆79Updated last year
- Tandem repeat genotyping and visualization from PacBio HiFi data☆119Updated 2 months ago
- A tool for profiling long STRs from short reads☆97Updated 4 years ago
- A tool for estimating repeat sizes☆195Updated last year
- Research release basecalling models and configurations☆113Updated last month
- Structural Variant Identification Method using Genome Assemblies☆121Updated 2 years ago
- ☆98Updated 3 weeks ago