idanefroni / Conservatory
Identification of conserved non-coding sequences in plants
☆14Updated 2 months ago
Alternatives and similar repositories for Conservatory:
Users that are interested in Conservatory are comparing it to the libraries listed below
- Simple tools for working with Hi-C data☆17Updated 6 years ago
- Scripts to do haplotype analysis on pan genomes.☆21Updated 4 years ago
- A program to generate a graph which presents a simplified representation of several full length genomes☆12Updated 6 years ago
- Generate pan-gene sets, given a collection of genome assemblies and corresponding gene models.☆17Updated last month
- A Hi-C scaffolding method☆22Updated 3 years ago
- parallelLastz: Running Lastz in parallel☆15Updated 6 months ago
- Reduction of Althaps and Duplicate Contigs for Improved Hi-C Scaffolding☆20Updated 3 weeks ago
- SINE annotation tool for plant genomes☆17Updated last year
- Genome alignment and synteny plots☆29Updated last year
- Telomere local assembly, Improved whole genome polish, and Plastid assembly☆18Updated this week
- ☆16Updated 3 years ago
- Construct and Analyze the North American Vitis pangenome☆22Updated last year
- Some components that speed up and reduce resource cost for original ALLHiC☆12Updated last week
- A nextflow pipeline for polishing CLR assemblies☆17Updated 2 years ago
- A loose collection of scripts and utilities for processing and analyzing the Goat reference genome assembly☆11Updated 8 years ago
- a tool to evaluate long-read error correction mainly with PacBio High-Fidelity Reads (HiFi reads).☆21Updated last year
- TGSFilter: An ultra-fast and efficient tool for long reads filtering and trimming☆21Updated 10 months ago
- Pipeline for genome scaffolding by modelling distributions of HiC pairs☆10Updated 2 years ago
- Pipeline to detect PAVs (presence/absence variations) in genome comparison using whole genome alignment.☆29Updated 7 years ago
- We developed GenomeSyn as a new tool for constructing and visualizing genome synteny, its novel design and implementation can serve as a …☆25Updated 3 years ago
- ☆12Updated 4 years ago
- The tools are used for displaying hic signal of genome☆23Updated 4 years ago
- A viewer for multiple alignment format (MAF) files in JBrowse 2☆12Updated last month
- HiC-Hiker: A probabilistic model to determine contig orientation in chromosome-length scaffolds with Hi-C☆26Updated 4 years ago
- ☆15Updated 3 years ago
- ☆13Updated 9 months ago
- Consensus genome annotation using OMA☆22Updated 3 months ago
- Segmental duplication detection tool☆13Updated 2 years ago
- a fork of the gap-closing pipeline PBJelly☆14Updated 6 years ago
- Scripts used to perform analyses in Rice et al. (2023)☆15Updated last year