idanefroni / ConservatoryLinks
Identification of conserved non-coding sequences in plants
☆29Updated 3 weeks ago
Alternatives and similar repositories for Conservatory
Users that are interested in Conservatory are comparing it to the libraries listed below
Sorting:
- Generate pan-gene sets, given a collection of genome assemblies and corresponding gene models.☆17Updated 2 months ago
- A pipeline for genomic variant detection with genome assemblies at population scale☆29Updated 4 months ago
- We developed GenomeSyn as a new tool for constructing and visualizing genome synteny, its novel design and implementation can serve as a …☆30Updated 3 years ago
- ☆43Updated last year
- A Hi-C scaffolding method☆22Updated 3 years ago
- Pipeline to detect PAVs (presence/absence variations) in genome comparison using whole genome alignment.☆29Updated 7 years ago
- A module for improving the insertion sequences of structural variant calls☆32Updated 4 years ago
- Scripts to do haplotype analysis on pan genomes.☆21Updated 5 years ago
- ☆31Updated 5 years ago
- Simple tools for working with Hi-C data☆18Updated 6 years ago
- Yet another Hi-C scaffolding tool☆22Updated last year
- Convert Tandem Repeat Finder dat file output into gff3 format☆28Updated 10 months ago
- An R package to identify and classify duplicated genes from whole-genome protein sequence data☆28Updated last month
- HiC-Hiker: A probabilistic model to determine contig orientation in chromosome-length scaffolds with Hi-C☆26Updated 4 years ago
- Convert RepeatMasker ".out" file into a gff3 with colors!!!☆22Updated 5 years ago
- ☆28Updated 3 years ago
- Inferring natural selection by comparative population genomic analysis across species☆25Updated last year
- A genome annotation pipeline that use short and long sequencing reads alignments from animal genomes☆30Updated last year
- Construct and Analyze the North American Vitis pangenome☆25Updated 2 months ago
- TGSFilter: An ultra-fast and efficient tool for long reads filtering and trimming☆25Updated last year
- ☆36Updated 3 months ago
- Integrate multiple genome assemblies into a pangenome graph☆35Updated 3 years ago
- Tool for decomposition centromeric assemblies and long reads into monomers☆35Updated 3 years ago
- The tools are used for displaying hic signal of genome☆24Updated 4 years ago
- Add multiple thread function for genome comparison☆16Updated 4 years ago
- CATG (Collinearity-based Assembly correcTor GUI) is a tool that can correct genome assembly with collinearity and generate tour files for…☆17Updated 8 months ago
- A method for measuring chromosome-specific telomere length from long reads☆22Updated last year
- Computational Analysis of Gene Expression Evolution☆43Updated 2 months ago
- use variant nesting information to flter overlapping sites from vg deconstruct output☆26Updated 4 months ago
- ☆21Updated last year