TheJacksonLaboratory / SVELinks
☆51Updated 6 years ago
Alternatives and similar repositories for SVE
Users that are interested in SVE are comparing it to the libraries listed below
Sorting:
- Pipeline for structural variation detection in cohorts☆52Updated 4 years ago
- heuristics to merge structural variant calls in VCF format.☆38Updated 9 years ago
- ☆35Updated 4 years ago
- Structural variant merging tool☆55Updated last year
- Structural variant caller☆55Updated 3 years ago
- Python package and routines for merging VCF files☆29Updated 4 years ago
- R API for browsing, analyzing, and manipulating reference-aligned genome graphs in a GenomicRanges framework☆41Updated last month
- Pipeline for structural variant image curation and analysis.☆49Updated 4 years ago
- Long-read splice alignment with high accuracy☆64Updated last year
- SV genotyping with long reads☆40Updated 2 years ago
- Identify and annotate TE-mediated insertions in long-read sequence data☆46Updated 5 months ago
- Code for phasing SVs with SNPs☆52Updated 5 years ago
- Genotype and phase short tandem repeats using Illumina whole-genome sequencing data☆32Updated 4 years ago
- Code and custom scripts relevant to gnomAD-SV (Collins*, Brand*, et al., 2020)☆37Updated 5 years ago
- Reproducibility workflow for Gigante et al., 2018: Using long-read sequencing to detect imprinted DNA methylation☆23Updated 6 years ago
- RetroSeq is a bioinformatics tool that searches for mobile element insertions from aligned reads in a BAM file and a library of reference…☆67Updated 3 years ago
- Transposable element polymorphism identification☆34Updated 5 years ago
- ☆30Updated 4 years ago
- Upscaling SV detection to a multi-population level.☆22Updated 4 months ago
- Structural variant (SV) analysis tools☆39Updated last year
- ☆83Updated 9 months ago
- Exact Tandem Repeat Finder (not a TRF replacement)☆50Updated 6 years ago
- ☆44Updated last year
- Public Benchmark of Long-Read Structural Variant Caller on PacBio CCS HG002 Data☆50Updated 4 years ago
- A simple script to create a customizable html file from an AnnotSV output.☆19Updated last year
- Python scripts for matching output of Pacific Biosciences IsoSeq RNA-seq pipeline to an annotation file.☆23Updated 10 years ago
- This repo is be archived, these workflows are still housed housed in the GATK repository under the scripts directory. The workflows are a…☆22Updated 5 years ago
- Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata☆58Updated 3 years ago
- TEMP is a software package for detecting transposable elements (TEs) insertions and excisions from pooled high-throughput sequencing dat…☆22Updated 8 years ago
- MetaSV: An accurate and integrative structural-variant caller for next generation sequencing☆59Updated 8 years ago