TheJacksonLaboratory / SVELinks
☆51Updated 5 years ago
Alternatives and similar repositories for SVE
Users that are interested in SVE are comparing it to the libraries listed below
Sorting:
- Structural variant caller☆54Updated 3 years ago
- heuristics to merge structural variant calls in VCF format.☆36Updated 8 years ago
- SV genotyping with long reads☆39Updated 2 years ago
- Structural variant merging tool☆53Updated 11 months ago
- Pipeline for structural variant image curation and analysis.☆48Updated 3 years ago
- Pipeline for structural variation detection in cohorts☆49Updated 3 years ago
- Code for phasing SVs with SNPs☆52Updated 5 years ago
- Python package and routines for merging VCF files☆29Updated 4 years ago
- Genotype and phase short tandem repeats using Illumina whole-genome sequencing data☆32Updated 4 years ago
- Structural Variant Prediction Viewer☆35Updated 8 years ago
- Reproducibility workflow for Gigante et al., 2018: Using long-read sequencing to detect imprinted DNA methylation☆23Updated 6 years ago
- Transposable element polymorphism identification☆33Updated 5 years ago
- ☆81Updated 5 months ago
- Exact Tandem Repeat Finder (not a TRF replacement)☆49Updated 5 years ago
- Identify and annotate TE-mediated insertions in long-read sequence data☆42Updated last month
- ☆35Updated 4 years ago
- Long read alignment analysis. Generate a reports on sequence alignments for mappability vs read sizes, error patterns, annotations and r…☆47Updated 6 years ago
- Long-read splice alignment with high accuracy☆64Updated 10 months ago
- MetaSV: An accurate and integrative structural-variant caller for next generation sequencing☆56Updated 8 years ago
- TEMP is a software package for detecting transposable elements (TEs) insertions and excisions from pooled high-throughput sequencing dat…☆22Updated 8 years ago
- RetroSeq is a bioinformatics tool that searches for mobile element insertions from aligned reads in a BAM file and a library of reference…☆67Updated 2 years ago
- R API for browsing, analyzing, and manipulating reference-aligned genome graphs in a GenomicRanges framework☆41Updated last week
- A snakemake pipeline for SV analysis from nanopore genome sequencing☆51Updated 5 years ago
- Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata☆57Updated 3 years ago
- Structural Variants Pipeline for Long Reads☆44Updated 7 years ago
- ☆29Updated 4 years ago
- A collection of command line tools for working with sequencing data☆51Updated last month
- Split-read pipeline for the identification of non-reference TE insertions with TSDs☆25Updated 4 years ago
- A software for calculating telomere length☆70Updated 6 years ago
- Segmental Duplication Assembler (SDA).☆44Updated 2 years ago