☆51Aug 27, 2019Updated 6 years ago
Alternatives and similar repositories for SVE
Users that are interested in SVE are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Bayesian genotyper for structural variants☆136Mar 6, 2021Updated 5 years ago
- Pipeline for structural variation detection in cohorts☆52Sep 14, 2021Updated 4 years ago
- Upscaling SV detection to a multi-population level.☆22Jul 28, 2025Updated 7 months ago
- Tools for processing and analyzing structural variants.☆157May 2, 2022Updated 3 years ago
- Method to optimally select samples for validation and resequencing☆30Apr 6, 2021Updated 4 years ago
- Population-scale detection of non-reference sequence variants using colored de Bruijn Graphs☆26Apr 29, 2024Updated last year
- A Data Fusion Method for Multi Source (VCF4.0+) Structural Variation Analysis☆23Feb 4, 2025Updated last year
- ☆13Jan 23, 2020Updated 6 years ago
- Toolset for SV simulation, comparison and filtering☆413Dec 1, 2023Updated 2 years ago
- structural variant calling and genotyping with existing tools, but, smoothly.☆264Jun 17, 2024Updated last year
- A framework to annotate SVs with previous known SVs (vcf file) and or with genomic features (gff and or bed files)☆13Mar 12, 2018Updated 8 years ago
- Tools for the analysis of structural variation in genomes☆81Feb 23, 2026Updated last month
- Structural variant merging tool☆57Aug 23, 2024Updated last year
- Structural variant detection and association testing☆108Feb 2, 2023Updated 3 years ago
- Simulation toolbox for structural variations.☆10May 30, 2019Updated 6 years ago
- Merging, Annotation, Validation, and Illustration of Structural variants☆75Aug 22, 2023Updated 2 years ago
- ☆15Jun 12, 2020Updated 5 years ago
- lumpy: a general probabilistic framework for structural variant discovery☆339Feb 22, 2026Updated last month
- Genotyping of segregating mobile elements insertions☆19Jul 29, 2021Updated 4 years ago
- Structural variant caller☆55Dec 8, 2021Updated 4 years ago
- Population-scale genotyping using pangenome graphs☆197Jan 9, 2025Updated last year
- Structural variation and indel detection by local assembly☆254Mar 17, 2026Updated last week
- Runs a combination of tools to generate structural variant calls on whole-genome sequencing data☆103Nov 5, 2020Updated 5 years ago
- Approach to identify simple and complex structural genomic rearrangements using a randomized approach☆21Nov 14, 2018Updated 7 years ago
- MetaSV: An accurate and integrative structural-variant caller for next generation sequencing☆59Jun 30, 2017Updated 8 years ago
- Prioritize structural variants based on CADD scores☆29May 7, 2020Updated 5 years ago
- RelocaTE2☆18Oct 6, 2023Updated 2 years ago
- Support Vector Structural Variation Genotyper☆58May 29, 2020Updated 5 years ago
- calling SVs from Blasr contig level alignments☆54Mar 9, 2018Updated 8 years ago
- don't get DUP'ed or DEL'ed by your putative SVs.☆107Dec 14, 2020Updated 5 years ago
- Convert structural variants to sequence graphs [ VCF + FASTA ---> GFA ]☆11Mar 6, 2024Updated 2 years ago
- Unfazed by genomic variant phasing☆27May 26, 2024Updated last year
- Updated figures for "A benchmarking of WGS-based structural variant callers" paper☆27Apr 3, 2022Updated 3 years ago
- R package designed to simplify structural variant analysis☆74Dec 22, 2021Updated 4 years ago
- Structural variant toolkit for VCFs☆401Updated this week
- Evaluate the performances (precision and recall) of structural variation (SV) callers☆36Sep 8, 2025Updated 6 months ago
- Recommended Graphtyper pipelines☆15Feb 22, 2021Updated 5 years ago
- Archived version 1.0.2☆16Nov 25, 2019Updated 6 years ago
- Comprehensive benchmark of structural variant callers☆48Feb 4, 2021Updated 5 years ago