TheJacksonLaboratory / SVELinks
☆51Updated 5 years ago
Alternatives and similar repositories for SVE
Users that are interested in SVE are comparing it to the libraries listed below
Sorting:
- Structural variant caller☆54Updated 3 years ago
- Structural variant merging tool☆49Updated 9 months ago
- Long read to rMATS☆31Updated 2 years ago
- heuristics to merge structural variant calls in VCF format.☆36Updated 8 years ago
- A snakemake pipeline for SV analysis from nanopore genome sequencing☆51Updated 5 years ago
- Pipeline for structural variant image curation and analysis.☆48Updated 3 years ago
- R package for inferring copy number from read depth☆32Updated 2 years ago
- Reproducibility workflow for Gigante et al., 2018: Using long-read sequencing to detect imprinted DNA methylation☆23Updated 6 years ago
- Pipeline for structural variation detection in cohorts☆49Updated 3 years ago
- R API for browsing, analyzing, and manipulating reference-aligned genome graphs in a GenomicRanges framework☆40Updated last week
- novoBreak: local assembly for breakpoint detection in cancer genomes☆26Updated 7 years ago
- Exact Tandem Repeat Finder (not a TRF replacement)☆49Updated 5 years ago
- RetroSeq is a bioinformatics tool that searches for mobile element insertions from aligned reads in a BAM file and a library of reference…☆66Updated 2 years ago
- MetaSV: An accurate and integrative structural-variant caller for next generation sequencing☆56Updated 7 years ago
- PopSTR - A Population based microsatellite genotyper☆33Updated last year
- A simple script to create a customizable html file from an AnnotSV output.☆18Updated last year
- Code for phasing SVs with SNPs☆52Updated 5 years ago
- Tools for processing and analyzing structural variants.☆33Updated 9 years ago
- ☆35Updated 4 years ago
- A new tool to infer sex from massively parallel sequencing data.☆17Updated 3 weeks ago
- Population-wide Deletion Calling☆35Updated last month
- Structural Variant Prediction Viewer☆34Updated 7 years ago
- Third-generation fusion gene detection☆14Updated last year
- Prioritize structural variants based on CADD scores☆29Updated 5 years ago
- Structural Variants Pipeline for Long Reads☆44Updated 6 years ago
- for visual evaluation of read support for structural variation☆54Updated last year
- SV genotyping with long reads☆39Updated last year
- Immuological gene typing and annotation for genome assembly☆37Updated 2 months ago
- Master of Pores 2☆23Updated 6 months ago
- smCounter: a versatile UMI-aware variant caller to detect both somatic and germline SNVs and indels. Published in article "Detecting very…☆20Updated 6 years ago