bcgsc / xmatchview
🗻 Visualization of genome/gene sequence synteny
☆38Updated last year
Alternatives and similar repositories for xmatchview:
Users that are interested in xmatchview are comparing it to the libraries listed below
- Symmetric DUST for finding low-complexity regions in DNA sequences☆37Updated last year
- Assembler for raw de novo genome assembly of long uncorrected reads.☆37Updated 5 years ago
- Converting and demultiplexing of PacBio BAM files into gzipped fasta and fastq files.☆37Updated 2 years ago
- Compute N50/NG50 and auN/auNG☆31Updated last year
- Miscellaneous scripts for applications of PacBio systems☆27Updated 2 years ago
- Pipeline for scaffolding and breaking a genome assembly using 10x genomics linked-reads☆22Updated 2 years ago
- A tool for the recovery of unassembled telomeres from soft-clipped read alignments.☆35Updated last week
- TAXnomic Profile Aggregation and STAndardisation☆38Updated 4 months ago
- 🍊 💫 Trim, circularise and orient long read bacterial genome assemblies☆26Updated 5 years ago
- Exact Tandem Repeat Finder (not a TRF replacement)☆48Updated 5 years ago
- Segmental Duplication Assembler (SDA).☆44Updated last year
- A method of assessing sequence complexity based on kmer frequencies☆31Updated 6 years ago
- GFAffix identifies walk-preserving shared affixes in variation graphs and collapses them into a non-redundant graph structure.☆36Updated 2 weeks ago
- Minimizer-based assembly scaffolding and mapping using long reads☆37Updated 5 months ago
- Three bacterial GWAS methods all rolled into one easy-to-use R package☆20Updated 11 months ago
- ✏️ Genome assembly polishing & SNV detection☆66Updated last month
- A bioinformatics tutorial demonstrating a best-practice workflow to review a flowcell's sequence_summary.txt☆30Updated 4 years ago
- CRyPTIC data processing pipelines☆32Updated 8 months ago
- reference-based long read assemblies of bacterial genomes☆47Updated 3 years ago
- Software that separates very close sequences that have been collapsed during assembly. Uses only long reads.☆34Updated last month
- Find Unique genomic Regions☆29Updated last week
- Multi-platform genome assembly pipeline for Illumina, Nanopore and PacBio reads☆58Updated 6 months ago
- The final version 2 release of our software to detect core genes in eukaryotic genomes☆28Updated 10 years ago
- ☆32Updated 2 weeks ago
- Correct and scaffold assemblies using long reads☆50Updated last year
- Kraken2 Server☆21Updated last year
- Extract metagenome-assembled genomes (MAGs) from metagenomic data using Hi-C.☆23Updated last month
- ☆35Updated last year
- Whole genome core alignments from multiple draft genomes☆12Updated 8 years ago
- R package and wrapper functions for identifying serial structural variations from genome assemblies☆27Updated 6 months ago