liangclab / HERALinks
☆77Updated 5 years ago
Alternatives and similar repositories for HERA
Users that are interested in HERA are comparing it to the libraries listed below
Sorting:
- Few scripts facilitating the extraction of info from Repeat Masker .out files☆81Updated 4 years ago
- A program to call variants from genome alignment☆81Updated 4 months ago
- A collection of scripts for working with Hi-C data, Juicebox, and other genomic file formats☆67Updated 4 years ago
- Neural network classification of TE☆92Updated 2 months ago
- A parallel wrapper for LTR_FINDER☆54Updated 5 months ago
- Mapping pipeline for data generated using Arima-HiC☆80Updated last year
- ☆44Updated 8 years ago
- dnaPipeTE (for de-novo assembly & annotation Pipeline for Transposable Elements), is a pipeline designed to find, annotate and quantify T…☆58Updated 2 years ago
- NLR-Annotator upload☆71Updated 2 years ago
- use long sequenced reads to close gaps in assemblies☆37Updated 6 years ago
- DNA序列比对结果 可视化展示工具☆54Updated 2 years ago
- GCE (genomic charactor estimator) is a bayes model based method to estimate the genome size, genomic repeat content and the heterozygsis…☆53Updated 5 years ago
- LTR_Finder is an efficient program for finding full-length LTR retrotranspsons in genome sequences.☆49Updated last year
- Python package and CLI for whole-genome duplication related analyses. **This package is deprecated in favor of** https://github.com/heche…☆85Updated last year
- Identification of errors in draft genome assemblies with single-base pair resolution for quality assessment and improvement☆67Updated last month
- A software to assemble chloroplast and mitochodrial genomes using PacBio data☆40Updated 5 years ago
- ☆71Updated 5 years ago
- A organelle de novo genome assembly toolkit☆69Updated 6 months ago
- DNA序列比对结果 可视化展示工具☆44Updated 3 years ago
- This is the standalone version of the EviAnn pipeline☆115Updated last week
- BITACORA: A Bioinformatics tool for gene family annotation☆47Updated 2 months ago
- ☆82Updated last year
- A novel genome assembly pipeline based on deep learning☆64Updated 8 months ago
- TSEBRA: Transcript Selector for BRAKER☆47Updated 9 months ago
- tomato graph pangenome☆84Updated 2 years ago
- Application of pan-genome for population☆108Updated 10 months ago
- Structural Variant Identification Method using Genome Assemblies☆122Updated 2 years ago
- A python script for finding telomeric repeats (TTAGGG/CCCTAA) in FASTA files☆34Updated 3 years ago
- Scripts to estimate genome size and coverage from kmer distribution generated by jellyfish☆57Updated 2 years ago
- Useful bioinformatic scripts☆58Updated 9 months ago