Alternatives and similar repositories for HERA:

Users that are interested in HERA are comparing it to the libraries listed below

• 4ureliek / Parsing-RepeatMasker-Outputs
  Few scripts facilitating the extraction of info from Repeat Masker .out files
  ☆78Updated 3 years ago
• mapleforest / HaploMerger2
  ☆43Updated 8 years ago
• mahulchak / svmu
  A program to call variants from genome alignment
  ☆77Updated 10 months ago
• fanagislab / GCE
  GCE (genomic charactor estimator) is a bayes model based method to estimate the genome size, genomic repeat content and the heterozygsis…
  ☆48Updated 4 years ago
• Gaius-Augustus / TSEBRA
  TSEBRA: Transcript Selector for BRAKER
  ☆47Updated 2 months ago
• clemgoub / dnaPipeTE
  dnaPipeTE (for de-novo assembly & annotation Pipeline for Transposable Elements), is a pipeline designed to find, annotate and quantify T…
  ☆52Updated last year
• LiLabAtVT / DeepTE
  Neural network classification of TE
  ☆87Updated 2 years ago
• aubombarely / Organelle_PBA
  A software to assemble chloroplast and mitochodrial genomes using PacBio data
  ☆37Updated 4 years ago
• phasegenomics / juicebox_scripts
  A collection of scripts for working with Hi-C data, Juicebox, and other genomic file formats
  ☆65Updated 3 years ago
• JiaoLaboratory / CRAQ
  Identification of errors in draft genome assemblies with single-base pair resolution for quality assessment and improvement
  ☆56Updated 2 weeks ago
• ArimaGenomics / mapping_pipeline
  Mapping pipeline for data generated using Arima-HiC
  ☆71Updated 8 months ago
• JanaSperschneider / FindTelomeres
  A python script for finding telomeric repeats (TTAGGG/CCCTAA) in FASTA files
  ☆32Updated 2 years ago
• steuernb / NLR-Annotator
  NLR-Annotator upload
  ☆62Updated last year
• Yandell-Lab / maker
  Genome Annotation Pipeline
  ☆35Updated 5 months ago
• xiaochuanle / MECAT2
  ☆70Updated 4 years ago
• c-zhou / oatk
  A organelle de novo genome assembly toolkit
  ☆51Updated last month
• BGI-shenzhen / RectChr
  Multi-level visualization of genomic statistical variables on rectangular chromosomes
  ☆85Updated 2 months ago
• daewoooo / SVbyEye
  ☆74Updated 3 months ago
• molevol-ub / bitacora
  BITACORA: A Bioinformatics tool for gene family annotation
  ☆44Updated 9 months ago
• Sunhh / NGS_data_processing
  Tool set for processing fasta/fastq/table formated data. Usually they are perl scripts.
  ☆51Updated this week
• chenlianfu / geta
  ☆73Updated 6 months ago
• kiranbandi / synvisio
  SynVisio is an interactive multiscale visualization tool that lets you explore the results of McScanX a popular synteny and collinearity …
  ☆82Updated 11 months ago
• dePamphilis / PlantTribes
  PlantTribes is a collection of automated gene family analysis pipelines for comparative plant genomics
  ☆35Updated last year
• yjx1217 / RMRB
  This is an archive version of old RepBase library (v20170127) for RepeatMasker.
  ☆29Updated 3 years ago
• sujaikumar / assemblage
  Tools for working with second gen assemblies, fasta sequences, etc
  ☆92Updated 8 years ago
• shingocat / lrscaf
  TGS scaffolding
  ☆46Updated 3 years ago
• oushujun / LTR_FINDER_parallel
  A parallel wrapper for LTR_FINDER
  ☆49Updated last year
• xzhub / LTR_Finder
  LTR_Finder is an efficient program for finding full-length LTR retrotranspsons in genome sequences.
  ☆43Updated last year
• xuzhougeng / Genomic_tools
  Genomic related tools
  ☆71Updated 3 years ago
• wk8910 / bio_tools
  Useful bioinformatic scripts
  ☆53Updated 2 months ago