De-novo Assembly Structural Variant Caller
☆13Sep 15, 2016Updated 10 years ago
Alternatives and similar repositories for DASVC
Users that are interested in DASVC are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- SMRT-SV: Structural variant and indel caller for PacBio reads☆28Feb 21, 2019Updated 7 years ago
- A software for discovery, genotyping and characterization of structural variants☆22Sep 11, 2024Updated 2 years ago
- Hemang Parikh☆11Jan 12, 2016Updated 10 years ago
- calling SVs from Blasr contig level alignments☆54Mar 9, 2018Updated 8 years ago
- Pipeline to detect PAVs (presence/absence variations) in genome comparison using whole genome alignment.☆31Mar 5, 2018Updated 8 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Convert structural variants to sequence graphs [ VCF + FASTA ---> GFA ]☆11Mar 6, 2024Updated 2 years ago
- Structural variant detection and association testing☆109Feb 2, 2023Updated 3 years ago
- Human pan-genome analysis pipeline☆30Apr 30, 2020Updated 6 years ago
- Annotate Olfactory receptor CDS from genome☆11Apr 29, 2023Updated 3 years ago
- Header-only, gzread-like reader for gzip, bz2, and xz.☆11Aug 8, 2018Updated 8 years ago
- Script to help assessing the evolutionary history of a TE family☆16Sep 5, 2019Updated 7 years ago
- heuristics to merge structural variant calls in VCF format.☆38Oct 6, 2016Updated 9 years ago
- laSV is a software package that employs local assembly to detect structural variations from whole-genome high-throughput sequencing datas…☆12Sep 26, 2016Updated 9 years ago
- AnceTran2.0: R package for transcriptome evolution analysis based on RNA-seq expression data or ChIP-seq TF-binding data☆12May 19, 2019Updated 7 years ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- SVsim: a tool that generates synthetic Structural Variant calls as benchmarks to test/evaluate SV calling pipelines.☆18Dec 4, 2017Updated 8 years ago
- Segmental duplication detection tool☆15Feb 7, 2023Updated 3 years ago
- ☆13Nov 15, 2017Updated 8 years ago
- Multisample Variant Format ToolKit☆10Oct 12, 2021Updated 4 years ago
- scripts used to analyse horizontal transfer and evolution of transposable elements in 307 vertebrate species☆11May 16, 2021Updated 5 years ago
- ExOrthist: a pipeline to extract exon orthologies at any evolutionary distance.☆26Dec 5, 2024Updated last year
- Tools for improving the sensitivity and specificity of genome alignments☆58Mar 12, 2026Updated 6 months ago
- Code for TAD_SV project☆11Mar 16, 2022Updated 4 years ago
- Fast, Accurate, and Complete SSR Detection in Genomic Sequences☆11Jun 29, 2020Updated 6 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- CAAStools is a bioinformatics toolbox that allows the user to identify and validate CAAS on MSA of orthologous proteins.☆26Nov 21, 2023Updated 2 years ago
- Interactive visualization of assembly graphs☆83Apr 2, 2022Updated 4 years ago
- variation discovery using long range information in linked-reads☆15Oct 5, 2021Updated 4 years ago
- A program to generate a graph which presents a simplified representation of several full length genomes☆13Aug 23, 2018Updated 8 years ago
- A scalable variant calling and benchmarking framework supporting both short and long reads.☆14Sep 28, 2025Updated 11 months ago
- All JBrowse plugins created by Brigitte Hofmeister☆10Apr 27, 2018Updated 8 years ago
- Toolkit for extracting SVs from long sequences and benchmarking variant callers☆12Jan 10, 2017Updated 9 years ago
- A JBrowse 1 plugin to view multiple alignment format (MAF) files☆27Oct 25, 2023Updated 2 years ago
- Simple pipeline to go from an alignment to a neutral model, using the PHAST toolkit☆11Jan 17, 2020Updated 6 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆11Apr 20, 2018Updated 8 years ago
- A couple of tools I find indispensable for post orthomcl down-stream analysis.☆11Oct 2, 2019Updated 6 years ago
- A loose collection of scripts and utilities for processing and analyzing the Goat reference genome assembly☆11Feb 28, 2017Updated 9 years ago
- For bluntifying overlapped GFAs☆13Jul 26, 2024Updated 2 years ago
- Reference genome quality scores☆20Dec 17, 2020Updated 5 years ago
- Process, visualize, and analyze phylogenetic trees☆13Updated this week
- ☆11Dec 9, 2022Updated 3 years ago