zeeev / DASVCLinks
De-novo Assembly Structural Variant Caller
☆13Updated 9 years ago
Alternatives and similar repositories for DASVC
Users that are interested in DASVC are comparing it to the libraries listed below
Sorting:
- An algorithm for centromere assembly using long error-prone reads☆25Updated 4 years ago
- A program to generate a graph which presents a simplified representation of several full length genomes☆13Updated 7 years ago
- Kmer based genotyper for short reads.☆23Updated 4 years ago
- Pipeline to detect PAVs (presence/absence variations) in genome comparison using whole genome alignment.☆29Updated 7 years ago
- Population-scale detection of non-reference sequence variants using colored de Bruijn Graphs☆26Updated last year
- Method to optimally select samples for validation and resequencing☆29Updated 4 years ago
- A loose collection of scripts and utilities for processing and analyzing the Goat reference genome assembly☆11Updated 8 years ago
- A module for improving the insertion sequences of structural variant calls☆32Updated 4 years ago
- CAMSA: a tool for Comparative Analysis and Merging of Scaffold Assemblies☆24Updated 5 years ago
- Identification of segmental duplications in the genome☆27Updated 3 years ago
- Segmental duplication detection tool☆16Updated 2 years ago
- FastRemap, a C++ tool for quickly remapping reads between genome assemblies based on the commonly used CrossMap tool. Link to paper: http…☆26Updated 3 years ago
- use variant nesting information to flter overlapping sites from vg deconstruct output☆29Updated 5 months ago
- The MafFilter genome alignment processor☆19Updated 6 months ago
- Compare different genome alignment tools using a wide range of genomes with different complexities.☆14Updated 2 years ago
- recompute GFA link overlaps☆25Updated 3 years ago
- Convert HAL to VG☆22Updated last year
- A software for discovery, genotyping and characterization of structural variants☆22Updated last year
- A Hi-C scaffolding method☆22Updated 3 years ago
- ☆31Updated 5 years ago
- R package and wrapper functions for identifying serial structural variations from genome assemblies☆27Updated last year
- Fast, Accurate, and Complete SSR Detection in Genomic Sequences☆11Updated 5 years ago
- Phasing reads with secondary alignments☆21Updated 11 months ago
- Workflows for correcting and scaffolding long-read (PacBio, nanopore) genome assemblies using optical mapping and/or Dovetail Hi-C data☆20Updated 5 years ago
- base-accurate DNA sequence alignments using edlib and mashmap2☆32Updated 4 years ago
- Lift-over alignments from variant-aware references☆34Updated 2 years ago
- Very simple and configurable all-in-one dotplot program☆14Updated 2 years ago
- Long-read aligner to pangenome graphs☆27Updated last year
- Scaffolding with Ultralong Reads☆15Updated 5 years ago
- ☆16Updated 4 years ago