mcfrith / tandem-genotypesLinks
☆48Updated last year
Alternatives and similar repositories for tandem-genotypes
Users that are interested in tandem-genotypes are comparing it to the libraries listed below
Sorting:
- Dynamic time warping of Oxford Nanopore squiggle data to characterize tandem repeats.☆32Updated 5 years ago
- Variant annotation and merging pipeline☆39Updated last month
- ☆36Updated last year
- ☆81Updated 5 months ago
- MarginPolish: Graph based assembly polishing☆46Updated 4 years ago
- ☆77Updated 5 years ago
- Code for phasing SVs with SNPs☆52Updated 5 years ago
- Segmental Duplication Assembler (SDA).☆44Updated 2 years ago
- SV analysis of the long-read sequencing data of the 1019 samples of the 1KG-ONT panel☆30Updated 4 months ago
- ☆31Updated 5 years ago
- Tool for assessing/improving assembly quality in extra-long tandem repeats☆46Updated 4 years ago
- SV genotyping with long reads☆39Updated 2 years ago
- Efficient and accurate pathogenicity prediction for coding and regulatory structural variants in long-read genome sequencing☆37Updated last year
- Custom tools to 'facilitate' BioNano Genomics data analysis☆34Updated 6 years ago
- A battery of methylation tools for PacBio HiFi reads☆40Updated last month
- Structural Variants Pipeline for Long Reads☆44Updated 7 years ago
- ☆34Updated 5 years ago
- Joint structural variant and copy number variant caller for HiFi sequencing data☆59Updated last week
- Alignment-free genotyper for SNPs and short indels, implemented in Python.☆49Updated 5 months ago
- An easy way to run BioNano genomic analysis☆28Updated 4 years ago
- TGS scaffolding☆46Updated 3 years ago
- SV calling for diploid assemblies☆28Updated last year
- VACmap: a long-read aligner specifically designed for complex structural variation discovery☆36Updated last month
- Swipe your Structural Variants called on long (ONT/PacBio) reads with short exact (Illumina) reads.☆32Updated 2 years ago
- calling SVs from Blasr contig level alignments☆54Updated 7 years ago
- A module for improving the insertion sequences of structural variant calls☆31Updated 4 years ago
- Compute N50/NG50 and auN/auNG☆32Updated last year
- Method to optimally select samples for validation and resequencing☆28Updated 4 years ago
- Graphical interactive tool for the visualization of sequence graphs in GFA format.☆71Updated 6 years ago
- building a human pangenome from the HPRCy1v2 genbank accessioned assemblies☆14Updated 2 years ago