☆52Jun 25, 2024Updated 2 years ago
Alternatives and similar repositories for tandem-genotypes
Users that are interested in tandem-genotypes are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Dynamic time warping of Oxford Nanopore squiggle data to characterize tandem repeats.☆32Jul 2, 2020Updated 6 years ago
- a hidden Markov model to infer simple repeats from genome sequences☆39Feb 19, 2021Updated 5 years ago
- HAT is a set of tools for calling de novo variants from whole-genome sequencing data.☆24Nov 18, 2025Updated 11 months ago
- Nanopore raw signal repeat detection pipeline☆45Mar 17, 2023Updated 3 years ago
- Tandem Repeats Caller for LOng Reads☆17May 28, 2021Updated 5 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Noise-Cancelling Repeat Finder☆27Apr 2, 2026Updated 6 months ago
- diploid SNV caller for error-prone reads☆212Apr 26, 2024Updated 2 years ago
- Tandem repeat genotyping and visualization from PacBio HiFi data☆145Jun 10, 2026Updated 4 months ago
- ☆85Mar 3, 2025Updated last year
- Detect novel (and reference) STR expansions from short-read data☆72Dec 6, 2025Updated 10 months ago
- Translocator: local realignment and global remapping enabling accurate translocation detection using single-molecule sequencing long read…☆12Jan 22, 2020Updated 6 years ago
- Long read aligner☆115May 26, 2023Updated 3 years ago
- A tool for genotyping Variable Number Tandem Repeats (VNTR) from sequence data☆49Dec 6, 2024Updated last year
- Official code repository for JAX-CNV☆14Jan 16, 2020Updated 6 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- ☆134Oct 25, 2026Updated last week
- Structural Variants Pipeline for Long Reads☆45Jul 17, 2018Updated 8 years ago
- Structural variant caller for low-depth long-read sequencing data☆50Feb 5, 2026Updated 8 months ago
- SMRT-SV: Structural variant and indel caller for PacBio reads☆28Feb 21, 2019Updated 7 years ago
- Tool to annotate outfiles from ExpansionHunter and TRGT with the pathologic implications of the repeat☆42Updated this week
- source code of the paper "RepLong - de novo repeat discovery from long reads"☆17Jan 4, 2025Updated last year
- Structural variant toolkit for VCFs☆426Oct 3, 2026Updated 3 weeks ago
- Structural variant caller☆55Dec 8, 2021Updated 4 years ago
- Variant calling tool for long-read sequencing data☆119Mar 19, 2025Updated last year
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Segmental Duplication Assembler (SDA).☆44May 7, 2023Updated 3 years ago
- BlockPolish: accurate polishing of long-read assembly via block divide-and-conquer☆17Jun 15, 2023Updated 3 years ago
- ☆15Aug 22, 2023Updated 3 years ago
- A framework to annotate SVs with previous known SVs (vcf file) and or with genomic features (gff and or bed files)☆13Mar 12, 2018Updated 8 years ago
- Miscellaneous scripts for applications of PacBio systems☆27Apr 19, 2022Updated 4 years ago
- Long read based human genomic structural variation detection with cuteSV☆296Oct 12, 2026Updated 2 weeks ago
- An accurate repeat detection from Nanopore data using deep learning and image techniques☆24Feb 28, 2023Updated 3 years ago
- Population-wide Deletion Calling☆35Apr 16, 2025Updated last year
- Fast and accurate coordinate conversion between assemblies☆117Updated this week
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Detecting genome structural variants with deep learning in single molecule sequencing☆118Apr 9, 2025Updated last year
- Copy number caller for long read data including SNV utilization☆72Mar 31, 2025Updated last year
- Graphical interactive tool for the visualization of sequence graphs in GFA format.☆76Feb 19, 2019Updated 7 years ago
- PEPPER-Margin-DeepVariant☆261Jan 12, 2024Updated 2 years ago
- NGMLR is a long-read mapper designed to align PacBio or Oxford Nanopore (standard and ultra-long) to a reference genome with a focus on r…☆310Mar 18, 2024Updated 2 years ago
- SV calling for diploid assemblies☆32Mar 22, 2024Updated 2 years ago
- Structural Variant Identification Method using Long Reads☆189Jun 29, 2021Updated 5 years ago