mcfrith / tandem-genotypes
☆48Updated 10 months ago
Alternatives and similar repositories for tandem-genotypes
Users that are interested in tandem-genotypes are comparing it to the libraries listed below
Sorting:
- Code for phasing SVs with SNPs☆52Updated 5 years ago
- Dynamic time warping of Oxford Nanopore squiggle data to characterize tandem repeats.☆32Updated 4 years ago
- MarginPolish: Graph based assembly polishing☆46Updated 4 years ago
- Efficient and accurate pathogenicity prediction for coding and regulatory structural variants in long-read genome sequencing☆37Updated 10 months ago
- ☆79Updated 2 months ago
- Miscellaneous scripts for applications of PacBio systems☆27Updated 3 years ago
- ☆76Updated 4 years ago
- ☆34Updated 5 years ago
- Public Benchmark of Long-Read Structural Variant Caller on PacBio CCS HG002 Data☆50Updated 4 years ago
- SV genotyping with long reads☆40Updated last year
- Custom tools to 'facilitate' BioNano Genomics data analysis☆33Updated 6 years ago
- Variant annotation and merging pipeline☆34Updated last month
- Swipe your Structural Variants called on long (ONT/PacBio) reads with short exact (Illumina) reads.☆32Updated 2 years ago
- Tumour-only somatic mutation calling using long reads☆26Updated 6 months ago
- SV calling for diploid assemblies☆27Updated last year
- Segmental Duplication Assembler (SDA).☆44Updated 2 years ago
- Structural variant caller☆54Updated 3 years ago
- DNA methylation analysis downstream to Nanopolish for Oxford Nanopore DNA sequencing datasets☆34Updated 4 years ago
- Alignment-free genotyper for SNPs and short indels, implemented in Python.☆49Updated 2 months ago
- calling SVs from Blasr contig level alignments☆54Updated 7 years ago
- VACmap: a long-read aligner specifically designed for complex structural variation discovery☆35Updated 5 months ago
- ☆30Updated 8 months ago
- Tool for assessing/improving assembly quality in extra-long tandem repeats☆46Updated 4 years ago
- An easy way to run BioNano genomic analysis☆27Updated 4 years ago
- Set of tools to manipulate and visualize modified base bam files☆55Updated 2 years ago
- ☆34Updated last year
- Reference-based variant calling pipeline for a pair of phased haplotype assemblies☆100Updated 3 years ago
- Detection and genotyping of structural variants☆18Updated last month
- Structural Variants Pipeline for Long Reads☆44Updated 6 years ago
- A Nextflow workflow to generate lift over files for any pair of genomes☆65Updated last month