schatzlab / pseudohaploidLinks
Create a pseudohaploid assembly from a partially resolved diploid assembly
☆32Updated 5 years ago
Alternatives and similar repositories for pseudohaploid
Users that are interested in pseudohaploid are comparing it to the libraries listed below
Sorting:
- Draw a dot plot from a paf alignment☆30Updated 3 months ago
- ☆30Updated 5 years ago
- Tool for assessing/improving assembly quality in extra-long tandem repeats☆46Updated 4 years ago
- ☆30Updated 6 months ago
- SV calling for diploid assemblies☆28Updated last year
- A Plant Presence/absence Variants Scanner and Pan-genome Construction Pipeline☆27Updated 4 years ago
- ☆27Updated 3 months ago
- Tool for globally phasing diploid assembly graphs with orthogonal data☆40Updated 7 months ago
- ☆37Updated last year
- Pipeline to detect PAVs (presence/absence variations) in genome comparison using whole genome alignment.☆29Updated 7 years ago
- A Hi-C scaffolding method☆23Updated 3 years ago
- We developed GenomeSyn as a new tool for constructing and visualizing genome synteny, its novel design and implementation can serve as a …☆27Updated 3 years ago
- ☆16Updated 3 years ago
- A genome assembly assessment pipeline.☆37Updated last year
- ☆42Updated last year
- Convert RepeatMasker ".out" file into a gff3 with colors!!!☆21Updated 4 years ago
- ☆36Updated last week
- TD2☆13Updated last month
- calling SVs from Blasr contig level alignments☆54Updated 7 years ago
- plot genome alignment synteny☆21Updated 5 years ago
- SV genotyper for long reads with a variation graph☆12Updated 3 months ago
- Integrate multiple genome assemblies into a pangenome graph☆34Updated 3 years ago
- Python scripts to run tandem repeat finder program (Benson, 1999) and parse the results☆12Updated 6 years ago
- Identification of transposable element families from pangenome polymorphisms☆51Updated last month
- Toolkit for evolutionary analyses of linkage groups☆32Updated last year
- Convert Tandem Repeat Finder dat file output into gff3 format☆27Updated 6 months ago
- ☆21Updated 11 months ago
- Domain based annotation of transposable elements☆19Updated 2 months ago
- ☆35Updated 2 years ago
- This repository contains relevant code and explanation for ”Leveraging a phased pangenome to design ideal haplotypes for hybrid potato br…☆30Updated 5 months ago