jmonlong / PopSV
Population-based detection of structural variation from High-Throughput Sequencing.
☆31Updated 2 years ago
Alternatives and similar repositories for PopSV:
Users that are interested in PopSV are comparing it to the libraries listed below
- ☆23Updated 5 years ago
- BreakSeq2: Ultrafast and accurate nucleotide-resolution analysis of structural variants☆24Updated 9 years ago
- Adapters for trimming☆30Updated 6 years ago
- Simultaneous detection of SNPs and Indels using a 16-genotype probabilistic model☆27Updated last year
- Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata☆56Updated 3 years ago
- FermiKit small variant calls for public SGDP samples☆17Updated 8 years ago
- novoBreak: local assembly for breakpoint detection in cancer genomes☆26Updated 6 years ago
- v2.x of the microassembly based somatic variant caller☆20Updated 2 weeks ago
- Python package and routines for merging VCF files☆29Updated 4 years ago
- Unfazed by genomic variant phasing☆26Updated 10 months ago
- A small R package to make sequencing read coverage plots in R.☆37Updated 2 years ago
- Functions to compare a SV call sets against a truth set.☆29Updated 11 months ago
- Expectation-Maximization algorithm for Allele-Specific Expression☆21Updated last year
- Software to assemble contigs/scaffolds into chromosomes using Hi-C data☆28Updated 6 months ago
- Pipeline for structural variant image curation and analysis.☆48Updated 3 years ago
- a set of NGS pipelines☆24Updated this week
- Population-wide Deletion Calling☆35Updated 7 months ago
- Benchmark pipeline for Structural Variation analyses, funded by the ALLBio.☆24Updated 10 years ago
- R Interface to the NCBI SRA metadata☆23Updated 6 years ago
- ☆21Updated 3 months ago
- A tool for Read Multi-Mapper Resolution☆23Updated 8 years ago
- A program for fast and accurate genome-guided transcripts reconstruction and quantification from RNA-seq (Supporting Pacbio single-end)☆23Updated 3 years ago
- Reducing reference bias using multiple population reference genomes☆32Updated 10 months ago
- Snakemake workflow for Illumina RNA-sequencing experiments - extract population genomic signals from RNA-Seq data☆18Updated this week
- Prioritize structural variants based on CADD scores☆29Updated 4 years ago
- Filter and prioritize fusion calls☆20Updated 6 months ago
- Relative Abundance of Transcripts: An R package for the detection of Differential Transcript isoform Usage.☆32Updated 2 years ago
- Exploration of controlled loss of quality values for compressing CRAM files☆34Updated 2 years ago
- A set of tools to annotate VCF files with expression and readcount data☆29Updated last month
- RNA-seq for Mendelian disease diagnostics: A hands-on tutorial through bioinformatic tools and workflows☆17Updated 3 years ago