jmonlong / PopSV
Population-based detection of structural variation from High-Throughput Sequencing.
☆30Updated 2 years ago
Related projects ⓘ
Alternatives and complementary repositories for PopSV
- Personal diploid genome creation and coordinate conversion☆21Updated last month
- ☆23Updated 5 years ago
- Expectation-Maximization algorithm for Allele-Specific Expression☆21Updated last year
- Simultaneous detection of SNPs and Indels using a 16-genotype probabilistic model☆27Updated 10 months ago
- FermiKit small variant calls for public SGDP samples☆17Updated 8 years ago
- Relative Abundance of Transcripts: An R package for the detection of Differential Transcript isoform Usage.☆32Updated 2 years ago
- A program for fast and accurate genome-guided transcripts reconstruction and quantification from RNA-seq (Supporting Pacbio single-end)☆23Updated 3 years ago
- BreakSeq2: Ultrafast and accurate nucleotide-resolution analysis of structural variants☆24Updated 8 years ago
- Unfazed by genomic variant phasing☆26Updated 5 months ago
- fast webservices based query tool for large sets of genomic features☆25Updated last year
- DRAGEN Tumor/Normal workflow post-processing☆22Updated last year
- PopSTR - A Population based microsatellite genotyper☆32Updated last year
- Validation runs using bcbio: germline, somatic, structural variant calling and RNA-seq analyses☆31Updated 2 years ago
- Runs a combination of tools to generate structural variant calls on short-read whole-genome sequencing data☆20Updated 2 years ago
- A small R package to make sequencing read coverage plots in R.☆37Updated 2 years ago
- Ximmer is a system for CNV calling on exome and targeted genomic sequencing☆19Updated 2 months ago
- Callable Cancer Loci - assessment of sequencing coverage for actionable and pathogenic loci in cancer☆21Updated 3 years ago
- Work for the tree sequence inference paper.☆23Updated 4 years ago
- novoBreak: local assembly for breakpoint detection in cancer genomes☆26Updated 6 years ago
- Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata☆56Updated 2 years ago
- ☆21Updated 2 months ago
- Accurate, Lightweight Clustering of de novo Transcriptomes using Fragment Equivalence Classes☆30Updated 4 months ago
- Functions to compare a SV call sets against a truth set.☆25Updated 6 months ago
- Identifying, understanding, and correcting technical biases on the sex chromosomes in next-generation sequencing data☆23Updated 5 years ago
- Pipeline for Phylostratigraphy☆12Updated 2 years ago
- Chromatin segmentation in R☆19Updated 6 years ago
- Code for differential splicing comparison paper (Soneson, Matthes, et al.)☆20Updated 8 years ago
- R Interface to the NCBI SRA metadata☆23Updated 5 years ago
- R API for browsing, analyzing, and manipulating reference-aligned genome graphs in a GenomicRanges framework☆39Updated 2 months ago
- Combine reference and assembled transcriptomes for RNA-Seq analysis☆21Updated 4 years ago