jmonlong / PopSVLinks
Population-based detection of structural variation from High-Throughput Sequencing.
☆33Updated 3 years ago
Alternatives and similar repositories for PopSV
Users that are interested in PopSV are comparing it to the libraries listed below
Sorting:
- Personal diploid genome creation and coordinate conversion☆30Updated 7 months ago
- Runs a combination of tools to generate structural variant calls on short-read whole-genome sequencing data☆22Updated 4 years ago
- Expectation-Maximization algorithm for Allele-Specific Expression☆21Updated 2 years ago
- FermiKit small variant calls for public SGDP samples☆17Updated 9 years ago
- The Genome U-Plot is a JavaScript tool to visualize chromosomal abnormalities in the Human Genome using a U-shape layout.☆32Updated 2 years ago
- Simultaneous detection of SNPs and Indels using a 16-genotype probabilistic model☆27Updated last year
- ☆23Updated last week
- Integrative analysis of structural variations.☆40Updated last year
- Splice junction analysis and filtering from BAM files☆42Updated 3 years ago
- ☆21Updated 3 years ago
- a Shiny/R application to view and annotate copy number variations☆28Updated 2 years ago
- A program for fast and accurate genome-guided transcripts reconstruction and quantification from RNA-seq (Supporting Pacbio single-end)☆24Updated 4 years ago
- Adapters for trimming☆30Updated 6 years ago
- novoBreak: local assembly for breakpoint detection in cancer genomes☆25Updated 7 years ago
- Seeking information like heteroplasmy, structure variants, etc. on Mitochondrial genome from next generation sequencing☆41Updated 6 years ago
- Reducing reference bias using multiple population reference genomes☆34Updated last year
- A set of tools to annotate VCF files with expression and readcount data☆29Updated 8 months ago
- A method to identify structural variation from sequencing data in target regions☆32Updated 5 years ago
- Package Homepage: http://bioconductor.org/packages/devel/bioc/html/DRIMSeq.html Bug Reports: https://support.bioconductor.org/p/new/post/…☆11Updated 5 years ago
- ☆29Updated 6 years ago
- A bioinformatics best-practice analysis pipeline for the analysis of shallow whole genome sequencing (sWGS) data for the identification o…☆14Updated this week
- R API for browsing, analyzing, and manipulating reference-aligned genome graphs in a GenomicRanges framework☆41Updated 2 weeks ago
- Identifying, understanding, and correcting technical biases on the sex chromosomes in next-generation sequencing data☆23Updated 6 years ago
- Pipeline for structural variation detection in cohorts☆52Updated 4 years ago
- A command line tool to compute mapping statistics from a BAM file☆25Updated 3 years ago
- Functions to compare a SV call sets against a truth set.☆30Updated 5 months ago
- Pipeline for structural variant image curation and analysis.☆48Updated 3 years ago
- Software to assemble contigs/scaffolds into chromosomes using Hi-C data☆28Updated last year
- Mapped QC analysis program☆44Updated 7 years ago
- A program for summarising CpG methylation patterns☆20Updated 9 years ago