lexnederbragt / denovo-assembly-tutorialLinks
A tutorial for learning de novo assembly
☆33Updated 13 years ago
Alternatives and similar repositories for denovo-assembly-tutorial
Users that are interested in denovo-assembly-tutorial are comparing it to the libraries listed below
Sorting:
- Code for phasing SVs with SNPs☆52Updated 5 years ago
- ☆30Updated 5 years ago
- Split-read pipeline for the identification of non-reference TE insertions with TSDs☆25Updated 4 years ago
- heuristics to merge structural variant calls in VCF format.☆36Updated 8 years ago
- Pipeline for structural variant image curation and analysis.☆48Updated 3 years ago
- calling SVs from Blasr contig level alignments☆54Updated 7 years ago
- Segmental Duplication Assembler (SDA).☆44Updated 2 years ago
- ☆34Updated last year
- Variant annotation and merging pipeline☆37Updated last month
- Method to optimally select samples for validation and resequencing☆28Updated 4 years ago
- Working space for the GIAB TR benchmarking project☆21Updated 8 months ago
- ☆48Updated last year
- Custom tools to 'facilitate' BioNano Genomics data analysis☆33Updated 6 years ago
- Python package and routines for merging VCF files☆29Updated 4 years ago
- Prioritize structural variants based on CADD scores☆29Updated 5 years ago
- SV genotyping with long reads☆39Updated 2 years ago
- Pipeline for structural variation detection in cohorts☆49Updated 3 years ago
- Efficient and accurate pathogenicity prediction for coding and regulatory structural variants in long-read genome sequencing☆36Updated last year
- TideHunter: efficient and sensitive tandem repeat detection from noisy long reads using seed-and-chain☆20Updated last year
- Pipeline for scaffolding and breaking a genome assembly using 10x genomics linked-reads☆22Updated 2 years ago
- Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata☆57Updated 3 years ago
- A module for improving the insertion sequences of structural variant calls☆30Updated 4 years ago
- This is an unsupported fork of the PacBio blasr aligner. It contains my (very beta) optimizations and new functionality. It may disappea…☆21Updated 6 years ago
- Alignment-free genotyper for SNPs and short indels, implemented in Python.☆49Updated 4 months ago
- Bayesian reconstruction of ancient DNA fragments☆28Updated 11 months ago
- Long read alignment analysis. Generate a reports on sequence alignments for mappability vs read sizes, error patterns, annotations and r…☆47Updated 6 years ago
- ☆31Updated 11 months ago
- Identify and annotate TE-mediated insertions in long-read sequence data☆42Updated last week
- ☆30Updated 2 years ago
- Combine structural variation outputs from long sequencing reads into a superior call set☆17Updated last year