lexnederbragt / denovo-assembly-tutorial
A tutorial for learning de novo assembly
☆33Updated 12 years ago
Related projects ⓘ
Alternatives and complementary repositories for denovo-assembly-tutorial
- Pipeline for structural variant image curation and analysis.☆48Updated 2 years ago
- Split-read pipeline for the identification of non-reference TE insertions with TSDs☆24Updated 4 years ago
- ☆31Updated 5 years ago
- ☆33Updated 7 months ago
- TEMP is a software package for detecting transposable elements (TEs) insertions and excisions from pooled high-throughput sequencing dat…☆21Updated 7 years ago
- Identification of segmental duplications in the genome☆26Updated 2 years ago
- Improved Phased Assembler☆28Updated 2 years ago
- program for haplotype phasing from sequence reads and related tools☆25Updated 5 years ago
- An easy way to run BioNano genomic analysis☆27Updated 3 years ago
- Exact Tandem Repeat Finder (not a TRF replacement)☆46Updated 5 years ago
- Custom tools to 'facilitate' BioNano Genomics data analysis☆33Updated 6 years ago
- Scripts to reproduce TrioBinning manuscript☆17Updated 4 years ago
- Code for phasing SVs with SNPs☆52Updated 4 years ago
- A Nextflow workflow to generate lift over files for any pair of genomes☆54Updated last week
- An algorithm for centromere assembly using long error-prone reads☆26Updated 3 years ago
- Transposable Elements MOvement detection using LOng reads☆19Updated this week
- Python package and routines for merging VCF files☆29Updated 3 years ago
- Transposable element polymorphism identification☆32Updated 4 years ago
- Reproducibility workflow for Gigante et al., 2018: Using long-read sequencing to detect imprinted DNA methylation☆22Updated 5 years ago
- ☆29Updated 2 years ago
- Variant annotation and merging pipeline☆30Updated 3 weeks ago
- calling SVs from Blasr contig level alignments☆53Updated 6 years ago
- TideHunter: efficient and sensitive tandem repeat detection from noisy long reads using seed-and-chain☆19Updated 5 months ago
- Bayesian reconstruction of ancient DNA fragments☆25Updated 3 months ago
- This is an unsupported fork of the PacBio blasr aligner. It contains my (very beta) optimizations and new functionality. It may disappea…☆21Updated 5 years ago
- Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata☆56Updated 2 years ago
- ☆30Updated 2 weeks ago
- ☆27Updated 3 months ago
- Prioritize structural variants based on CADD scores☆28Updated 4 years ago
- Visualising discordant reads☆15Updated 9 years ago