lexnederbragt / denovo-assembly-tutorial
A tutorial for learning de novo assembly
☆33Updated 13 years ago
Alternatives and similar repositories for denovo-assembly-tutorial
Users that are interested in denovo-assembly-tutorial are comparing it to the libraries listed below
Sorting:
- TideHunter: efficient and sensitive tandem repeat detection from noisy long reads using seed-and-chain☆20Updated 11 months ago
- ☆30Updated 5 years ago
- Custom tools to 'facilitate' BioNano Genomics data analysis☆33Updated 6 years ago
- Pipeline for structural variant image curation and analysis.☆48Updated 3 years ago
- Prioritize structural variants based on CADD scores☆29Updated 5 years ago
- Detect and phase minor SNVs from long-read sequencing data☆14Updated 3 years ago
- Method to optimally select samples for validation and resequencing☆27Updated 4 years ago
- Workflows for correcting and scaffolding long-read (PacBio, nanopore) genome assemblies using optical mapping and/or Dovetail Hi-C data☆20Updated 4 years ago
- ☆34Updated last year
- An algorithm for centromere assembly using long error-prone reads☆26Updated 3 years ago
- Python package and routines for merging VCF files☆29Updated 4 years ago
- PopSTR - A Population based microsatellite genotyper☆33Updated last year
- This is an unsupported fork of the PacBio blasr aligner. It contains my (very beta) optimizations and new functionality. It may disappea…☆21Updated 6 years ago
- program for haplotype phasing from sequence reads and related tools☆25Updated 6 years ago
- heuristics to merge structural variant calls in VCF format.☆36Updated 8 years ago
- Reproducibility workflow for Gigante et al., 2018: Using long-read sequencing to detect imprinted DNA methylation☆23Updated 6 years ago
- Improved Phased Assembler☆28Updated 3 years ago
- ☆34Updated 5 years ago
- Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata☆56Updated 3 years ago
- SV genotyping with long reads☆40Updated last year
- toolkit to process gtf files☆17Updated 3 years ago
- Code for phasing SVs with SNPs☆52Updated 5 years ago
- Contig Ploidy and Allele Dosage Estimation☆10Updated 9 years ago
- ☆29Updated 2 years ago
- Visualising discordant reads☆15Updated 9 years ago
- Transcript assembly and quantification for RNA-Seq☆8Updated 5 years ago
- DNA multiple sequence aligner, official version from Penn State's Miller Lab☆32Updated 6 years ago
- Split-read pipeline for the identification of non-reference TE insertions with TSDs☆25Updated 4 years ago
- Genotyping of segregating mobile elements insertions☆19Updated 3 years ago
- Working space for the GIAB TR benchmarking project☆21Updated 6 months ago