lexnederbragt / denovo-assembly-tutorialLinks
A tutorial for learning de novo assembly
☆33Updated 13 years ago
Alternatives and similar repositories for denovo-assembly-tutorial
Users that are interested in denovo-assembly-tutorial are comparing it to the libraries listed below
Sorting:
- Pipeline for structural variant image curation and analysis.☆48Updated 3 years ago
- Code for phasing SVs with SNPs☆52Updated 5 years ago
- Custom tools to 'facilitate' BioNano Genomics data analysis☆34Updated 7 years ago
- ☆31Updated 5 years ago
- heuristics to merge structural variant calls in VCF format.☆38Updated 9 years ago
- A module for improving the insertion sequences of structural variant calls☆32Updated 4 years ago
- TideHunter: efficient and sensitive tandem repeat detection from noisy long reads using seed-and-chain☆21Updated last year
- calling SVs from Blasr contig level alignments☆54Updated 7 years ago
- Segmental Duplication Assembler (SDA).☆44Updated 2 years ago
- Working space for the GIAB TR benchmarking project☆23Updated last year
- ☆36Updated last year
- Pipeline for structural variation detection in cohorts☆52Updated 4 years ago
- SV genotyping with long reads☆40Updated 2 years ago
- ☆49Updated last year
- This is an unsupported fork of the PacBio blasr aligner. It contains my (very beta) optimizations and new functionality. It may disappea…☆22Updated 6 years ago
- Method to optimally select samples for validation and resequencing☆28Updated 4 years ago
- ☆43Updated last year
- Dynamic time warping of Oxford Nanopore squiggle data to characterize tandem repeats.☆32Updated 5 years ago
- ☆81Updated 7 months ago
- Variant annotation and merging pipeline☆39Updated 3 months ago
- Scripts to reproduce TrioBinning manuscript☆17Updated 5 years ago
- Combine structural variation outputs from long sequencing reads into a superior call set☆18Updated 2 months ago
- Identification of segmental duplications in the genome☆27Updated 3 years ago
- Python package and routines for merging VCF files☆29Updated 4 years ago
- An easy way to run BioNano genomic analysis☆28Updated 4 years ago
- Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata☆58Updated 3 years ago
- Efficient and accurate pathogenicity prediction for coding and regulatory structural variants in long-read genome sequencing☆38Updated last year
- Phase reads, assemble haplotypes and detect SVs☆19Updated 4 years ago
- Split-read pipeline for the identification of non-reference TE insertions with TSDs☆25Updated 5 years ago
- Simple script to generate whole-genome coverage plots☆19Updated 10 years ago