lexnederbragt / denovo-assembly-tutorial
A tutorial for learning de novo assembly
☆33Updated 13 years ago
Alternatives and similar repositories for denovo-assembly-tutorial:
Users that are interested in denovo-assembly-tutorial are comparing it to the libraries listed below
- Pipeline for structural variant image curation and analysis.☆48Updated 3 years ago
- Identification of segmental duplications in the genome☆26Updated 3 years ago
- Custom tools to 'facilitate' BioNano Genomics data analysis☆33Updated 6 years ago
- Variant annotation and merging pipeline☆32Updated 2 months ago
- ☆29Updated 2 years ago
- Prioritize structural variants based on CADD scores☆29Updated 4 years ago
- A module for improving the insertion sequences of structural variant calls☆30Updated 3 years ago
- PopSTR - A Population based microsatellite genotyper☆32Updated last year
- program for haplotype phasing from sequence reads and related tools☆25Updated 6 years ago
- Working space for the GIAB TR benchmarking project☆21Updated 5 months ago
- Python package and routines for merging VCF files☆29Updated 4 years ago
- Exact Tandem Repeat Finder (not a TRF replacement)☆48Updated 5 years ago
- Method to optimally select samples for validation and resequencing☆27Updated 3 years ago
- TideHunter: efficient and sensitive tandem repeat detection from noisy long reads using seed-and-chain☆20Updated 9 months ago
- Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata☆56Updated 3 years ago
- Workflows for correcting and scaffolding long-read (PacBio, nanopore) genome assemblies using optical mapping and/or Dovetail Hi-C data☆20Updated 4 years ago
- ☆30Updated 5 years ago
- StrVCTVRE, a structural variant classifier for exonic deletions and duplications☆18Updated last year
- Code for phasing SVs with SNPs☆52Updated 5 years ago
- DNA multiple sequence aligner, official version from Penn State's Miller Lab☆31Updated 6 years ago
- Population-wide Deletion Calling☆35Updated 6 months ago
- Detect and phase minor SNVs from long-read sequencing data☆14Updated 3 years ago
- exploratory scripts for clustering ccs amplicon data☆10Updated 4 years ago
- Improved Phased Assembler☆28Updated 3 years ago
- ☆21Updated 5 years ago
- Phase reads, assemble haplotypes and detect SVs☆19Updated 4 years ago
- heuristics to merge structural variant calls in VCF format.☆36Updated 8 years ago
- Archived version 1.0.2☆16Updated 5 years ago
- Scripts to reproduce TrioBinning manuscript☆17Updated 5 years ago
- SV genotyping with long reads☆40Updated last year