jkimlab / mySyntenyPortalLinks
A stand-alone application for constructing websites for visualizing and browsing synteny blocks
☆18Updated 4 years ago
Alternatives and similar repositories for mySyntenyPortal
Users that are interested in mySyntenyPortal are comparing it to the libraries listed below
Sorting:
- Split-read pipeline for the identification of non-reference TE insertions with TSDs☆25Updated 5 years ago
- scripts for the project of seven thaliana genomes assembly☆41Updated 4 years ago
- Likelihood-based Selective Sweep Detection☆40Updated last year
- scripts to parse and analyse MCScanX collinearity output☆32Updated 5 years ago
- The GitHub repository for the A. thaliana pan-NLR'ome project.☆18Updated 6 years ago
- Integrate multiple genome assemblies into a pangenome graph☆35Updated 3 years ago
- A repo contains historical and updated MTEC libraries.☆18Updated 5 years ago
- Dot: An interactive dot plot viewer for comparative genomics☆34Updated 2 years ago
- calling SVs from Blasr contig level alignments☆54Updated 7 years ago
- ☆31Updated 5 years ago
- Transposable element polymorphism identification☆34Updated 5 years ago
- TELR is a fast non-reference transposable element detector from long read sequencing data.☆33Updated 2 years ago
- Computational Analysis of Gene Expression Evolution☆43Updated last month
- ☆42Updated last year
- scripts for sequence and feature conversion, annotation, analysis ...☆28Updated 6 months ago
- Convert RepeatMasker ".out" file into a gff3 with colors!!!☆21Updated 5 years ago
- Scripts to reproduce TrioBinning manuscript☆17Updated 5 years ago
- De novo annotation of young retrotransposons☆48Updated 3 years ago
- Yet another Hi-C scaffolding tool☆22Updated 10 months ago
- We developed GenomeSyn as a new tool for constructing and visualizing genome synteny, its novel design and implementation can serve as a …☆29Updated 3 years ago
- ☆27Updated 2 years ago
- ☆15Updated 5 years ago
- A tool for recovering synteny blocks from multiple alignment☆30Updated 3 years ago
- Haplotype and population structure inference using neural networks.☆27Updated 9 months ago
- Genome-wide scan for balancing selection using beta statistic☆29Updated 2 years ago
- Improved Phased Assembler☆28Updated 3 years ago
- The code used in the manuscript titled "Gene duplication and evolution in recurring polyploidization-diploidization cycles in plants".☆28Updated 4 years ago
- These are scripts that I use frequently in genome annotation projects. Some of them have evolved awkwardly so the code is difficult to fo…☆16Updated 7 years ago
- Compute N50/NG50 and auN/auNG☆32Updated last year
- methods for orphan gene prediction paper optimization☆25Updated 3 years ago