jkimlab / mySyntenyPortalLinks
A stand-alone application for constructing websites for visualizing and browsing synteny blocks
☆18Updated 4 years ago
Alternatives and similar repositories for mySyntenyPortal
Users that are interested in mySyntenyPortal are comparing it to the libraries listed below
Sorting:
- TELR is a fast non-reference transposable element detector from long read sequencing data.☆35Updated 2 years ago
- Dot: An interactive dot plot viewer for comparative genomics☆35Updated 2 years ago
- Computational Analysis of Gene Expression Evolution☆44Updated 3 months ago
- read and analyse RepeatMasker output☆27Updated 2 years ago
- Split-read pipeline for the identification of non-reference TE insertions with TSDs☆25Updated 5 years ago
- calling SVs from Blasr contig level alignments☆54Updated 7 years ago
- ☆21Updated 6 years ago
- Compute N50/NG50 and auN/auNG☆33Updated 2 years ago
- Integrate multiple genome assemblies into a pangenome graph☆35Updated 3 years ago
- Convert RepeatMasker ".out" file into a gff3 with colors!!!☆23Updated 5 years ago
- The GitHub repository for the A. thaliana pan-NLR'ome project.☆18Updated 6 years ago
- Transposable element polymorphism identification☆34Updated 5 years ago
- Yet another Hi-C scaffolding tool☆22Updated last year
- CNEFinder: Finding Conserved Non-coding Elements in Genomes☆25Updated 4 years ago
- Genome scaffolding based on HiC data in heterozygous and high ploidy genomes☆60Updated 11 months ago
- De novo annotation of young retrotransposons☆48Updated 3 years ago
- Transposable Elements MOvement detection using LOng reads☆25Updated 4 months ago
- The code used in the manuscript titled "Gene duplication and evolution in recurring polyploidization-diploidization cycles in plants".☆29Updated 4 years ago
- ☆44Updated last year
- ☆22Updated 6 years ago
- An R package to identify and classify duplicated genes from whole-genome protein sequence data☆29Updated 2 months ago
- R package to draw syntenic plots in 3 different styles☆42Updated 3 months ago
- scripts to parse and analyse MCScanX collinearity output☆32Updated 5 years ago
- scripts for the project of seven thaliana genomes assembly☆42Updated 4 years ago
- ☆31Updated 6 years ago
- Snakemake pipeline to analyze transposable element 'omics data.☆29Updated 3 weeks ago
- ☆31Updated last year
- A pipeline for isoseq☆23Updated 7 years ago
- Scripts to reproduce TrioBinning manuscript☆17Updated 5 years ago
- ☆36Updated last year