A program to call variants from genome alignment
☆84Apr 29, 2025Updated last year
Alternatives and similar repositories for svmu
Users that are interested in svmu are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Assemblytics is a bioinformatics tool to detect and analyze structural variants from a genome assembly by comparing it to a reference gen…☆150Jun 23, 2026Updated 3 months ago
- ☆45May 8, 2024Updated 2 years ago
- Structural Variant Identification Method using Genome Assemblies☆147Sep 16, 2022Updated 4 years ago
- calling SVs from Blasr contig level alignments☆54Mar 9, 2018Updated 8 years ago
- ☆32Nov 25, 2019Updated 6 years ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Synteny and Rearrangement Identifier☆491Jul 1, 2026Updated 2 months ago
- Code for phasing SVs with SNPs☆54Mar 27, 2020Updated 6 years ago
- Extensive de-novo TE Annotator☆469Sep 10, 2026Updated 2 weeks ago
- NGMLR is a long-read mapper designed to align PacBio or Oxford Nanopore (standard and ultra-long) to a reference genome with a focus on r…☆310Mar 18, 2024Updated 2 years ago
- MUM&Co uses Whole Genome Alignment information provided by MUMmer (only v4) to detect Structural Variation☆77Jan 12, 2026Updated 8 months ago
- ☆78Dec 4, 2019Updated 6 years ago
- Likelihood-based Selective Sweep Detection☆42Oct 12, 2023Updated 2 years ago
- Fast and pretty dotplots for whole genomes assemblies using minimap and R/ggplot2☆80Aug 30, 2016Updated 10 years ago
- Scripts for NGS processing☆16Sep 6, 2017Updated 9 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Structural Variant Identification Method using Long Reads☆187Jun 29, 2021Updated 5 years ago
- An accurate GFF3/GTF lift over pipeline☆558Aug 1, 2023Updated 3 years ago
- Pipeline for structural variation detection in cohorts☆52Sep 14, 2021Updated 5 years ago
- HiC-Hiker: A probabilistic model to determine contig orientation in chromosome-length scaffolds with Hi-C☆26Jan 14, 2021Updated 5 years ago
- SALSA: A tool to scaffold long read assemblies with Hi-C data☆189May 17, 2024Updated 2 years ago
- ☆22Sep 22, 2022Updated 4 years ago
- Sensitive alignment of genomes with high sequence diversity, extensive structural polymorphism and whole-genome duplication variation☆202Aug 17, 2026Updated last month
- Fast and accurately polish the genome generated by long reads.☆247Jan 9, 2025Updated last year
- Reduction of Althaps and Duplicate Contigs for Improved Downstream Analysis☆21Jun 28, 2026Updated 3 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- ☆78Jun 12, 2020Updated 6 years ago
- Sequence-to-graph mapper and graph generator☆489Aug 11, 2025Updated last year
- Code to compute the XP-CLR statistic to infer natural selection☆108Jun 13, 2022Updated 4 years ago
- A module for improving the insertion sequences of structural variant calls☆33Jul 14, 2021Updated 5 years ago
- RaGOO is no longer supported. Please use RagTag instead: https://github.com/malonge/RagTag☆173May 30, 2021Updated 5 years ago
- Tools for manipulating sequence graphs in the GFA and rGFA formats☆253Dec 16, 2025Updated 9 months ago
- A EXPERIMENTAL fork of minimap2 optimized for assembly-to-reference alignment☆87Apr 8, 2021Updated 5 years ago
- haplotypic duplication identification tool☆295Oct 30, 2025Updated 10 months ago
- Structural variant caller☆55Dec 8, 2021Updated 4 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Tools for fast and flexible genome assembly scaffolding and improvement☆576Feb 14, 2024Updated 2 years ago
- BRAKER is a pipeline for fully automated prediction of protein coding gene structures with GeneMark-ES/ET/EP/ETP and AUGUSTUS in novel eu…☆467Jun 17, 2026Updated 3 months ago
- Scripts to do haplotype analysis on pan genomes.☆20Sep 24, 2020Updated 6 years ago
- De-novo Assembly Structural Variant Caller☆13Sep 15, 2016Updated 10 years ago
- ☆14Jul 27, 2019Updated 7 years ago
- Long read based human genomic structural variation detection with cuteSV☆295Updated this week
- Nanopore data assembler☆171Mar 27, 2022Updated 4 years ago