Nextomics / nextsv

Related projects ⓘ

Alternatives and complementary repositories for nextsv

• schatzlab / crossstitch
  Code for phasing SVs with SNPs
  ☆52Updated 4 years ago
• EichlerLab / smrtsv2
  Structural variant caller
  ☆54Updated 2 years ago
• zeeev / smartie-sv
  calling SVs from Blasr contig level alignments
  ☆53Updated 6 years ago
• Nextomics / pipeline-for-isoseq
  A pipeline for isoseq
  ☆23Updated 6 years ago
• JialiUMassWengLab / TEMP
  TEMP is a software package for detecting transposable elements (TEs) insertions and excisions from pooled high-throughput sequencing dat…
  ☆21Updated 7 years ago
• vgteam / sv-genotyping-paper
  ☆31Updated 4 years ago
• EichlerLab / svpop
  Variant annotation and merging pipeline
  ☆29Updated 3 weeks ago
• farhangus / Sniffles2_plot
  ☆27Updated 3 months ago
• vgteam / giraffe-sv-paper
  ☆41Updated 6 months ago
• llecompte / SVJedi
  SV genotyping with long reads
  ☆40Updated last year
• smehringer / SViper
  Swipe your Structural Variants called on long (ONT/PacBio) reads with short exact (Illumina) reads.
  ☆32Updated 2 years ago
• Xinglab / TideHunter
  TideHunter: efficient and sensitive tandem repeat detection from noisy long reads using seed-and-chain
  ☆19Updated 5 months ago
• adamewing / tldr
  Identify and annotate TE-mediated insertions in long-read sequence data
  ☆40Updated last year
• PacificBiosciences / pbipa
  Improved Phased Assembler
  ☆28Updated 2 years ago
• vpc-ccg / sedef
  Identification of segmental duplications in the genome
  ☆26Updated 2 years ago
• maickrau / ribotin
  ☆30Updated 2 weeks ago
• mcfrith / tandem-genotypes
  ☆46Updated 5 months ago
• Dfam-consortium / FamDB
  FamDB file format library and utilities
  ☆17Updated last week
• AppliedBioinformatics / runBNG
  An easy way to run BioNano genomic analysis
  ☆27Updated 3 years ago
• jkimlab / mySyntenyPortal
  A stand-alone application for constructing websites for visualizing and browsing synteny blocks
  ☆18Updated 3 years ago
• mkirsche / Iris
  A module for improving the insertion sequences of structural variant calls
  ☆29Updated 3 years ago
• shilpagarg / DipAsm
  ☆77Updated 4 years ago
• mrvollger / SDA
  Segmental Duplication Assembler (SDA).
  ☆44Updated last year
• DrosophilaGenomeEvolution / TrEMOLO
  Transposable Elements MOvement detection using LOng reads
  ☆19Updated this week
• AnimalGenomicsETH / bovine-graphs
  Integrate multiple genome assemblies into a pangenome graph
  ☆32Updated 2 years ago
• evotools / nf-LO
  A Nextflow workflow to generate lift over files for any pair of genomes
  ☆54Updated last week
• dfguan / asset
  assembly evaluation tool
  ☆34Updated 2 years ago
• ablab / TandemTools
  Tool for assessing/improving assembly quality in extra-long tandem repeats
  ☆45Updated 3 years ago
• lh3 / etrf
  Exact Tandem Repeat Finder (not a TRF replacement)
  ☆46Updated 5 years ago