Nextomics / nextsv
☆34Updated last year
Alternatives and similar repositories for nextsv:
Users that are interested in nextsv are comparing it to the libraries listed below
- Variant annotation and merging pipeline☆33Updated 2 weeks ago
- ☆30Updated 5 years ago
- ☆29Updated 7 months ago
- Exact Tandem Repeat Finder (not a TRF replacement)☆48Updated 5 years ago
- calling SVs from Blasr contig level alignments☆54Updated 7 years ago
- ☆48Updated 9 months ago
- Swipe your Structural Variants called on long (ONT/PacBio) reads with short exact (Illumina) reads.☆32Updated 2 years ago
- Pipeline for scaffolding and breaking a genome assembly using 10x genomics linked-reads☆22Updated 2 years ago
- An easy way to run BioNano genomic analysis☆27Updated 4 years ago
- A pipeline for isoseq☆23Updated 6 years ago
- Tool for assessing/improving assembly quality in extra-long tandem repeats☆46Updated 4 years ago
- Code for phasing SVs with SNPs☆52Updated 5 years ago
- Compute N50/NG50 and auN/auNG☆31Updated last year
- Custom tools to 'facilitate' BioNano Genomics data analysis☆33Updated 6 years ago
- ☆42Updated 11 months ago
- Genome scaffolding based on HiC data in heterozygous and high ploidy genomes☆60Updated 3 months ago
- methods for orphan gene prediction paper optimization☆25Updated 3 years ago
- SV genotyping with long reads☆40Updated last year
- Segmental Duplication Assembler (SDA).☆44Updated last year
- Structural variant caller☆54Updated 3 years ago
- TELR is a fast non-reference transposable element detector from long read sequencing data.☆33Updated last year
- Working space for the GIAB TR benchmarking project☆21Updated 5 months ago
- A module for improving the insertion sequences of structural variant calls☆30Updated 3 years ago
- Dynamic time warping of Oxford Nanopore squiggle data to characterize tandem repeats.☆32Updated 4 years ago
- Detection and genotyping of structural variants☆18Updated last month
- TideHunter: efficient and sensitive tandem repeat detection from noisy long reads using seed-and-chain☆20Updated 9 months ago
- A python script for finding telomeric repeats (TTAGGG/CCCTAA) in FASTA files☆33Updated 2 years ago
- Transposable element polymorphism identification☆33Updated 4 years ago
- Pipeline for structural variant image curation and analysis.☆48Updated 3 years ago
- A tool for recovering synteny blocks from multiple alignment☆30Updated 3 years ago