☆37Apr 13, 2024Updated last year
Alternatives and similar repositories for nextsv
Users that are interested in nextsv are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- SMRT-SV: Structural variant and indel caller for PacBio reads☆28Feb 21, 2019Updated 7 years ago
- ☆84Mar 3, 2025Updated last year
- Structural variation caller using third generation sequencing☆645Apr 2, 2026Updated last week
- SV genotyping with long reads☆40Jul 3, 2023Updated 2 years ago
- calling SVs from Blasr contig level alignments☆54Mar 9, 2018Updated 8 years ago
- NordVPN Special Discount Offer • AdSave on top-rated NordVPN 1 or 2-year plans with secure browsing, privacy protection, and support for for all major platforms.
- MetaSV: An accurate and integrative structural-variant caller for next generation sequencing☆59Jun 30, 2017Updated 8 years ago
- pbsv - PacBio structural variant (SV) calling and analysis tools☆165Feb 26, 2025Updated last year
- This tool is for users to upgrade their metagenomics assemblies using long reads. This includes fixing mis-assemblies and scaffolding/gap…☆13Mar 17, 2016Updated 10 years ago
- NGMLR is a long-read mapper designed to align PacBio or Oxford Nanopore (standard and ultra-long) to a reference genome with a focus on r…☆308Mar 18, 2024Updated 2 years ago
- Dynamic time warping of Oxford Nanopore squiggle data to characterize tandem repeats.☆32Jul 2, 2020Updated 5 years ago
- MECAT: an ultra-fast mapping, error correction and de novo assembly tool for single-molecule sequencing reads☆111Oct 2, 2020Updated 5 years ago
- ultrafast structural variation detection from circular consensus sequencing reads☆13Mar 8, 2022Updated 4 years ago
- Evaluate the performances (precision and recall) of structural variation (SV) callers☆36Sep 8, 2025Updated 7 months ago
- Public Benchmark of Long-Read Structural Variant Caller on PacBio CCS HG002 Data☆52Feb 3, 2021Updated 5 years ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- A tool to detect structural variant☆17Mar 27, 2023Updated 3 years ago
- VarIant SimulatOR for short, long and linked reads☆53Oct 21, 2024Updated last year
- Viola is a flexible and powerful python package designed specifically for analysis of genomic structural variant (SV) signatures.☆28Jul 26, 2024Updated last year
- Genome Scripts used in fungal comparative genomics☆65Sep 25, 2020Updated 5 years ago
- ☆19Nov 22, 2022Updated 3 years ago
- Segmental Duplication Assembler (SDA).☆44May 7, 2023Updated 2 years ago
- Long read based human genomic structural variation detection with cuteSV☆281Mar 26, 2026Updated 2 weeks ago
- ☆26Apr 22, 2025Updated 11 months ago
- Linear-time, low-memory construction of variation graphs☆20Feb 3, 2020Updated 6 years ago
- DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- A fuzzy Bruijn graph approach to long noisy reads assembly☆39Mar 15, 2017Updated 9 years ago
- Characterization of Structural Variation in Chinese samples☆18Dec 22, 2021Updated 4 years ago
- ☆17Nov 26, 2023Updated 2 years ago
- This repository is deprecated, please use the link to the right.☆23Dec 11, 2018Updated 7 years ago
- A Data Fusion Method for Multi Source (VCF4.0+) Structural Variation Analysis☆23Feb 4, 2025Updated last year
- Archived version 1.0.2☆16Nov 25, 2019Updated 6 years ago
- Structural variant caller for real-time long-read sequencing data☆61Dec 1, 2022Updated 3 years ago
- Deep learning framework for SV calling and genotyping☆113Nov 8, 2023Updated 2 years ago
- test repository☆29Jul 6, 2023Updated 2 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting with the flexibility to host WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Cloudways by DigitalOcean.
- This toolkit deals with GEnomic sequence and genome structure ANnotation files between inbreeding lines and species.☆45Mar 2, 2023Updated 3 years ago
- A Plant Presence/absence Variants Scanner and Pan-genome Construction Pipeline☆27May 24, 2021Updated 4 years ago
- Functions to compare a SV call sets against a truth set.☆30Jun 18, 2025Updated 9 months ago
- Public Benchmark of Long-Read Structural Variant Caller on ONT PromethION Data☆14Nov 28, 2019Updated 6 years ago
- A collection of scripts for working with Hi-C data, Juicebox, and other genomic file formats☆69May 22, 2021Updated 4 years ago
- Structural Variant Identification Method using Genome Assemblies☆139Sep 16, 2022Updated 3 years ago
- A tutorial on structural variant calling for short read sequencing data☆42Oct 24, 2024Updated last year